Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03761 ATGGATAATGGTTGTTTCCCTTCCCCTAGACGTGATTTTCCTGCAGGGCTGCGAGTTCTTGTTGTGGATGATGATCCAACATGGTTGAAGATCCTTGAAAAGATGCTCAAGAGGTGCAATTATGAAGTGACTACATGTTGTTTAGCAAGGCATGCTCTAAACTTGCTTCGTGAAAGGAAAGATGGATATGACATAGTTGTCAGCGATGTGAATATGCCTGACATGGATGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTGGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGAGAAATATATGGCAACATGTCTTAAGAAAAAGGATCCATGAGGCTAAAGAATTTGAAAGTTTTGAGAGTTTTGAGGGCATTCACTTAATGAGAAATGGATCAGAGCAGTCTGATGATGGGAGCCTGTTTTCTATAGAAGATATGACCTCAACAAAGAAAAGAAAAGATGTGGATAACAAACATGAAGACACAGAATTTTTGGATCCATCTTCCACAAAAAAAGCTAGAGTTGTTTGGTCGGTTGACCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGCTTTGATAAAGTTGGTCCCAAGAAAATACTGGATTTGATGAATGTTCCCTGGCTGACTAGGGAGAATGTTGCCAGCCACTTGCAGAAATACCGGCTTTACTTGACTAGGCTTCAGAAAGAAAACGGTCAGAAATCTTCCTCAAGTGGAATGAAGCATTCAGATTTACCTTCAAAAGATGTAGGAAGTTTTGGTTTTCAGAACTCAGTAAACAAGCAGCAAAATGATGTTTCAATTGACAGCTACAATTATTCAGATGAAACATTACAACTTCAGAATGTGGAAACTAAAAGTCATGAAGGTAATCCCAAGAGAATTGTTTCACAATCCACCACAGCAGAAAAAGGAAGAGCTTTGACTGGTAACATTACTGATACAAAGAAGAGAGAGAGTTTACAGATGGGCCTTAATCAACCTATTTCACCCCTTGAGTCAGAAGGAAACCATGCAGTGTTTGACATGCCAACACAGTACTCTTGGACAGAAGTTCCAGAAATGCAACTCAAAAAAGAACACAAGCCACTTGTTCATTTAGAAGATAGCTTCAACCAGTTGCCATTACATGGTAAACAGCATTACATCCCAGTTGATCAATCACAATCAATTGCTTCAATTAGTTCCACTCCCTCTATAACTGAAGAAGAGGTTGCTGCTTGTATAGAAACAAAACCTTTGTTTGCTGATTACAAGAATGATTATGCCAGTTCTGTGAGTTCAATAGGGAGTGCAGTTGACACCTTTCCAATTCAACCTGGAAGCCTTATGCTGAATGATCAACCTTCAGAACCCATTTCCACTATAAATTTTGGCTTGAAAACACAGGGATCTAATCTCAATCACATTTCTGATCTGGAGTTTTACCAAAGAAATCTACTTTTGGGAGGTGAGGCAGCTTCTGCACCTTTGGATGAGGACTTATATTTCTATTGGCTACAAGGTGAATGCTCTAATATGAACTCTGGTCAGCAGAATCTATGGATGCCTGAGTATTATGATCCAGGGCTTATTACAGAAGTTCCAACCCACTTCTGTGATTCAGCAGATTATTCAGTAATAGATCAAGGTCTATTCATAGCATAA 1737 0.3921 MDNGCFPSPRRDFPAGLRVLVVDDDPTWLKILEKMLKRCNYEVTTCCLARHALNLLRERKDGYDIVVSDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEAKEFESFESFEGIHLMRNGSEQSDDGSLFSIEDMTSTKKRKDVDNKHEDTEFLDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKENGQKSSSSGMKHSDLPSKDVGSFGFQNSVNKQQNDVSIDSYNYSDETLQLQNVETKSHEGNPKRIVSQSTTAEKGRALTGNITDTKKRESLQMGLNQPISPLESEGNHAVFDMPTQYSWTEVPEMQLKKEHKPLVHLEDSFNQLPLHGKQHYIPVDQSQSIASISSTPSITEEEVAACIETKPLFADYKNDYASSVSSIGSAVDTFPIQPGSLMLNDQPSEPISTINFGLKTQGSNLNHISDLEFYQRNLLLGGEAASAPLDEDLYFYWLQGECSNMNSGQQNLWMPEYYDPGLITEVPTHFCDSADYSVIDQGLFIA* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03761 578 SMART REC_2 17 129 IPR001789 GO:0000160
Rops11g03761 578 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Rops11g03761 578 FunFam Two-component response regulator 195 258 - -
Rops11g03761 578 Gene3D - 17 180 - -
Rops11g03761 578 FunFam Two-component response regulator 17 211 - -
Rops11g03761 578 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Rops11g03761 578 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Rops11g03761 578 CDD REC_typeB_ARR-like 19 133 - -
Rops11g03761 578 SUPERFAMILY CheY-like 16 145 IPR011006 -
Rops11g03761 578 Gene3D - 195 258 - -
Rops11g03761 578 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Rops11g03761 578 MobiDBLite consensus disorder prediction 260 286 - -
Rops11g03761 578 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 286 IPR045279 GO:0009736
Rops11g03761 578 MobiDBLite consensus disorder prediction 314 333 - -
Rops11g03761 578 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03761 Rops-Chr11 71327887 71331822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03761 13 265 Response Regulator Gene Family AT2G25180 55.078 1.31e-81 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Rops11g03761 Response_reg 5.1e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03761 11 71327887 71331822 Rops11g03761 11 71327887 71331822 ECH
Rops11g03761 11 71327887 71331822 Rops2g01393 2 19867652 19871915 PCT