Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03676 ATGGCTTCTACTCGTAATGAGTTTTATGTGCTTGTGCTGGTTTGCTCCATGGTGGCAGCATGTTCTGCTAACTTCAACCAAGACTTTGATCTAACATGGGGTGATCACCGTGCTAAGATATTCAATGGTGGTCAGCTTCTTTCTCTTTCTCTTGACAAAGTCTCTGGCTCTGGCTTCCAATCCAAGAAAGAGTACCTATTTGGGAGGATTGATATGCAACTCAAGCTTGTTGCTGGCAACTCAGCTGGCACAGTCACTGCTTACTACTTATCATCACAAGGACCAACTCATGATGAAATTGATTTTGAGTTCTTGGGGAATGTGAGCGGTGACCCCTACATTCTCCACACAAATGTCTTTACACAAGGCCAAGGGAACAGAGAACAACAATTCTATCTTTGGTTCGACCCCACCAGAAACTTCCACACTTACTCTATCATCTGGAAGCCCCAACACATTATATTCTTGGTTGATAACATCCCTATAAGGGTGTTCAAGAATACTGAGTCTCTTGGTGTTCCTTTCCCAAAGAACCAACCCATGAGAATCTATTCAAGCCTTTGGAACGCTGATGACTGGGCCACCAGAGGTGGTTTGGTGAAAACTGATTGGTCCAAGGCACCCTTTACAGCATACTACCGAAATTTCAAAGCCACCTCCATGTCTACCACCAACTCCTTCTCTGATGCTGCATGGCAGAGCAATGAGCTTGATGCTTATGGTAGAAGAAGATTGAGATGGGTTCAGAAGTACTTCATGATCTATAACTATTGCAATGATCTTAAGCGATTCCCACAAGGCATTCCTACTGAGTGTAGGCACTGA 825 0.4412 MASTRNEFYVLVLVCSMVAACSANFNQDFDLTWGDHRAKIFNGGQLLSLSLDKVSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTQGQGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNTESLGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATSMSTTNSFSDAAWQSNELDAYGRRRLRWVQKYFMIYNYCNDLKRFPQGIPTECRH* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03676 274 Gene3D - 10 274 - -
Rops11g03676 274 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 230 272 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Rops11g03676 274 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 273 IPR013320 -
Rops11g03676 274 PRINTS Glycosyl hydrolase family 16 signature 133 150 IPR008264 GO:0004553|GO:0005975
Rops11g03676 274 PRINTS Glycosyl hydrolase family 16 signature 57 75 IPR008264 GO:0004553|GO:0005975
Rops11g03676 274 PRINTS Glycosyl hydrolase family 16 signature 115 128 IPR008264 GO:0004553|GO:0005975
Rops11g03676 274 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 213 IPR000757 GO:0004553|GO:0005975
Rops11g03676 274 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 20 272 IPR044791 GO:0004553
Rops11g03676 274 PIRSF EndGlu_transf 1 274 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops11g03676 274 Pfam Glycosyl hydrolases family 16 26 206 IPR000757 GO:0004553|GO:0005975
Rops11g03676 274 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Rops11g03676 274 FunFam Xyloglucan endotransglucosylase/hydrolase 11 274 - -
Rops11g03676 274 CDD GH16_XET 22 272 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops11g03676 274 ProSitePatterns Glycosyl hydrolases family 16 active sites. 99 109 IPR008263 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03676 Rops-Chr11 70282499 70284216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03676 5 273 Glycoside Hydrolase AT3G23730 74.733 5.57e-163 452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03676 11 70282499 70284216 Rops11g03676 11 70282499 70284216 ECH