Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2469 ATGAAACCAAACTTTGATCTTGAAGTTGAGGCATATGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATGTTTCTATTTGTAGTGACAGCCTCACTAACATTTCCCACACCACAAATCCAATAGGGATTCATCCTAACTTAGATGCTATTTCACTTGACTTAACTCTCAACTTCAAGAACAGTGAGCCAGGGGGAAGAGATTCAATAGGATTCTCATTCTCAAGCACTAGCGAGAGCAGCAATGAACCTGCCTCTCAAACCACAGCAGCGACCATACCACGAGTCTTCTCTTGCAATTACTGTAAGCGCAAATTTTTCAGCTCTCAGGCTCTTGGTGGACACCAGAATGCACACAAGAGAGAAAGAACATTAGCAAAAAGAGCTTTGAGAATGGGATTTTTCTCTGAAAGGTATGCCAATCTAGCATCTCTCCCTCTGCATGGTTCTTTTAGGTCCTTAGGAATAAAGACACACTCTTCACTGCACCATGGCTTCTCACCAACAATGAGGCCTCCTGAGGTAAAAAACAATGCAAGATTTGATCAAGGGTATGTTGGCATCCCAGTATTCTTGGAGGATGATGAGTCAGATTTGTTGTGGCCGGGTAGTTTTCGTCAGGTTGTCGAGGCAGGTGATAGTCATCAGAATTTCATACTGACTGGAAGTTCAGATTTGAGCTTTACTGGGGTAAATCCACCTGTAGACATAGAGAACTCAATACCAGATTTGACTTTGAAACTTTGA 753 0.425 MKPNFDLEVEAYAEYESEVSSQVASNVSICSDSLTNISHTTNPIGIHPNLDAISLDLTLNFKNSEPGGRDSIGFSFSSTSESSNEPASQTTAATIPRVFSCNYCKRKFFSSQALGGHQNAHKRERTLAKRALRMGFFSERYANLASLPLHGSFRSLGIKTHSSLHHGFSPTMRPPEVKNNARFDQGYVGIPVFLEDDESDLLWPGSFRQVVEAGDSHQNFILTGSSDLSFTGVNPPVDIENSIPDLTLKL* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2469 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Pvu8g2469 250 Gene3D Classic Zinc Finger 77 142 - -
Pvu8g2469 250 SUPERFAMILY beta-beta-alpha zinc fingers 97 126 IPR036236 -
Pvu8g2469 250 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 250 - -
Pvu8g2469 250 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Pvu8g2469 250 MobiDBLite consensus disorder prediction 72 91 - -
Pvu8g2469 250 PANTHER ZINC FINGER PROTEIN JAGGED 1 250 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2469 Pvu-Chr8 55306967 55309730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2469 81 250 C2H2 Transcription Factor Family AT1G66140 51.244 2.90e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu8g2469 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2469 8 55306967 55309730 Pvu8g2469 8 55306967 55309730 ECH
Pvu1g2362 1 48964611 48967254 Pvu8g2469 8 55306967 55309730 PCT