Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2467 ATGGTTTTGTCATGGACCAGAGGGAGAGTGTTCCGGCGTGCTCGGAAGGGGAAGGAGTTGAGTTCTGGTAGCGATTTGGAGATAGAAATTGCCATCCCCACGCACTTCCGGTGCCCGGTAACCTTGGACATGATGAAAGACCCCGTGACGATGGCCACGGGAATAACCTACGACAGAGACAGCATCGAGAAGTGGATCGAGTCCGGGAACCGCACGTGCCCGGTTACGAAGACGGAGTTGACCAGCTTCGAGATGATCCCGAACCACTCCATTCGGAGGATGATTCAGGATTGGTGCGTGGAGCACCGTTCCCACGGGATCGAACGGATCCCCACTCCTCGGATCCCGGTGACCCCGTACGAGGTTACTGACACGTGTACGAGGATCCTGTCGGCGGCGCAGCACGGGGACGAGAACAAGTGTGTGGAGTTGGTGAGGAAGATTAAGGCATGGGGGAAGGAGAGTGAGAGGAACAAGAGGTGCATAGTGGTCAACGGGGCTGCTCTAGCACTAGCTAATGCGTTTAACATTTTCTCACGTGGGGTGGTTGAGAAGAACGTGGTTGTGTTGGATGAGATTCTGGGGGCGTTGACGTGGATGCGTCCTCTTTCTGAAGATGGTAGATCCGTGTTGGGGTCAGTGAGTTCTATTGGTTGCATGGTTTGGTTCATGAATGGTAAACAATTGGCGACAAGGCAGAACGCTGCTTTGTTGCTTAAGGAAATGCGCGTTGAGGCGTTGGTGAAATGTGAAGGCGTTTTTGAAGCTTTGGTTAACATGGTTAAGGAGCCTGTTGGGAATGCTTCCTCCAAGGCATGTTTGTCAACGATTTTTAAGTTGTTGGTTAATTCTTCAGGAAGTAATAGAGGCGTGGCTCGCGAGAGATTCGTGGAGTTGGGTTTGGTTTCGGTGTTGTTGGAGCTTCTTGTTGATGCTGAGAGAGGGGTGTGTGAGAAGGCTTTGGGGGTGTTGGATTGTCTTTGTGATTGTAAACAAGGGGTGGAGATGGCTAAAAGTAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTGTTGAGGGTGTCTGAGTTGAGTTCAAGCTTTGCTGTTTCGGTTCTTTGGAAGGTTTGTGACAAGACAGAAGAAGGGGTGTTGATTGAGGCTCTTCAAATTGGGGTGTTTCATAAACTCCTTGTTTTGTTGCAAGTGGGTTGTGCTGAGGGCACCAAAGAGAAGGCTACGGAGTTGTTGAAGTTATTTAATGGTTGCAGGAGCAAAGCTGAGTGTGTTGACTCCTCCTTGGACTTCAAGCACTTGAAGAACCCTTCTAATTGA 1314 0.5 MVLSWTRGRVFRRARKGKELSSGSDLEIEIAIPTHFRCPVTLDMMKDPVTMATGITYDRDSIEKWIESGNRTCPVTKTELTSFEMIPNHSIRRMIQDWCVEHRSHGIERIPTPRIPVTPYEVTDTCTRILSAAQHGDENKCVELVRKIKAWGKESERNKRCIVVNGAALALANAFNIFSRGVVEKNVVVLDEILGALTWMRPLSEDGRSVLGSVSSIGCMVWFMNGKQLATRQNAALLLKEMRVEALVKCEGVFEALVNMVKEPVGNASSKACLSTIFKLLVNSSGSNRGVARERFVELGLVSVLLELLVDAERGVCEKALGVLDCLCDCKQGVEMAKSNALTLPLVIKKLLRVSELSSSFAVSVLWKVCDKTEEGVLIEALQIGVFHKLLVLLQVGCAEGTKEKATELLKLFNGCRSKAECVDSSLDFKHLKNPSN* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2467 437 CDD RING-Ubox_PUB 36 77 IPR045210 -
Pvu8g2467 437 PANTHER WDSAM1 PROTEIN 7 435 IPR045185 GO:0061630
Pvu8g2467 437 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Pvu8g2467 437 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Pvu8g2467 437 SUPERFAMILY RING/U-box 27 108 - -
Pvu8g2467 437 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 435 - -
Pvu8g2467 437 Gene3D - 125 423 IPR011989 -
Pvu8g2467 437 SUPERFAMILY ARM repeat 126 400 IPR016024 -
Pvu8g2467 437 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Pvu8g2467 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2467 Pvu-Chr8 55277984 55280310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2467 24 435 U-box Gene Family AT5G37490 45.714 8.53e-120 354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2467 8 55277984 55280310 Pvu8g2467 8 55277984 55280310 ECH
Pvu1g2363 1 48969145 48970805 Pvu8g2467 8 55277984 55280310 PCT