Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1908 ATGGATGAAAGTTGGAGTGAGGGGAAAAGGAGCATGAATTACAAGGATGATGAGGATGATTATGAGGAAGAGGAAGAGGAGGAGGGCAGTGAGTACGGCGAGGATGGTAGGAAGAAGAGGGTGGCGCCTAACAAGAGAGCCTCCAAAGCTGGTGGCTCAATGCCACCTTCGTGTCAAGTTGATGGCTGTAATGCTGATCTAAGTGATGCTAAGCCCTACCACAGGCGTCACAAGGTCTGTGAGTACCATGCCAAGGCTCCTGCTGTACTCATTGCAGAGCACCACCAACGGTTTTGCCAACAATGCAGTAGGTTTCATGAACTATCAGAATTTGATGAATCAAAAAGGAGTTGTAGAAGACGTTTGGCTGGACATAACGAGAGGCGTCGCAAAAATGCATCTGAATATGGACATTGA 417 0.4772 MDESWSEGKRSMNYKDDEDDYEEEEEEEGSEYGEDGRKKRVAPNKRASKAGGSMPPSCQVDGCNADLSDAKPYHRRHKVCEYHAKAPAVLIAEHHQRFCQQCSRFHELSEFDESKRSCRRRLAGHNERRRKNASEYGH* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1908 138 PIRSF SBP 5 138 IPR017238 GO:0003677|GO:0003700|GO:0009908
Pvu6g1908 138 MobiDBLite consensus disorder prediction 113 138 - -
Pvu6g1908 138 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 14 133 IPR044817 GO:0003677
Pvu6g1908 138 MobiDBLite consensus disorder prediction 17 31 - -
Pvu6g1908 138 SUPERFAMILY SBT domain 56 135 IPR036893 GO:0003677|GO:0005634
Pvu6g1908 138 MobiDBLite consensus disorder prediction 1 16 - -
Pvu6g1908 138 MobiDBLite consensus disorder prediction 1 59 - -
Pvu6g1908 138 ProSiteProfiles Zinc finger SBP-type profile. 55 132 IPR004333 GO:0003677
Pvu6g1908 138 Pfam SBP domain 58 131 IPR004333 GO:0003677
Pvu6g1908 138 Gene3D - 48 119 IPR036893 GO:0003677|GO:0005634
Pvu6g1908 138 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 14 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1908 Pvu-Chr6 29283875 29285790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1908 1 135 SBP-box Gene Family AT2G33810 56.296 1.56e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu6g1908 SBP 1.1e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1908 6 29283875 29285790 Pvu6g1908 6 29283875 29285790 ECH
Pvu6g1908 6 29283875 29285790 Pvu11g1709 11 43283587 43284947 ECH
Pvu5g0765 5 12924825 12926343 Pvu6g1908 6 29283875 29285790 ECH
Pvu11g1709 11 43283587 43284947 Pvu6g1908 6 29283875 29285790 ECH
Pvu2g2373 2 39608101 39610326 Pvu6g1908 6 29283875 29285790 PCT