Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1900 ATGGCTCCCAGGGACAAGACCACTGCCGTTAAGGTTAACACTAACGGTAACGCCGGAGTCAAGGAGGCGCATTTTCGAGGAGTCAGGAAGAGGCCCTGGGGGAGATACGCCGCTGAGATTAGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTCGGCACCTTCGATACGGCGGAGGAAGCGGCGCGTGCCTACGACGCCGCCGCTCGCGAGTTTCGCGGCCCCAAGGCCAAGACCAATTTCCCTCCTCCATCCGATAATAATGTCAAGAACGCCAGCCCTAGCCAGAGCAGCACCGTCGAGTCCTCCAGCCGCGACCGCGATGTCGCCGCCGATTCCTCCCCGCTTGACCTCAACCTCGCCCCAGCCGCGATCTCCGCTGCACGCTTCCCCTTCCAGCAACAGTTTCCCGTTTTCCCGGCGGCGGCCAACCAGGTTTTGTACTTCGACGCTGTCCTACGCGCCGGTTTGGGCGGTCCACGTGGCTTTGGGTTTGGCTACAATCAGCATCCCGTTGCGGCGAGTGAGTTCCACGCGACGACGAGCGACTCCGACTCGTCCTCCGTGATCGATCTGAACCACAGCGAAGGCGATGTTAAGGGGAACGGTTCTAGAATTTTCGATCTTGACCTTAACCACCCTCCTCCACAGGAGATGGCCTGA 660 0.6061 MAPRDKTTAVKVNTNGNAGVKEAHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPPPSDNNVKNASPSQSSTVESSSRDRDVAADSSPLDLNLAPAAISAARFPFQQQFPVFPAAANQVLYFDAVLRAGLGGPRGFGFGYNQHPVAASEFHATTSDSDSSSVIDLNHSEGDVKGNGSRIFDLDLNHPPPQEMA* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1900 219 MobiDBLite consensus disorder prediction 71 111 - -
Pvu6g1900 219 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
Pvu6g1900 219 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Pvu6g1900 219 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Pvu6g1900 219 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Pvu6g1900 219 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Pvu6g1900 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 198 - -
Pvu6g1900 219 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Pvu6g1900 219 MobiDBLite consensus disorder prediction 80 103 - -
Pvu6g1900 219 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Pvu6g1900 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 198 - -
Pvu6g1900 219 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1900 Pvu-Chr6 29213340 29215073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1900 21 215 AP2-EREBP Transcription Factor Family AT5G44210 43.000 1.34e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu6g1900 AP2 1.5e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1900 6 29213340 29215073 Pvu6g1900 6 29213340 29215073 ECH
Pvu5g0772 5 13295710 13296859 Pvu6g1900 6 29213340 29215073 ECH
Pvu11g1689 11 42720583 42721619 Pvu6g1900 6 29213340 29215073 ECH
Pvu6g1900 6 29213340 29215073 Pvu11g1292 11 26734318 26735830 ECH