LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu6g1538	ATGAAATCCGGGGCGGGTTGGGAAGTACTTCATTTCCTGATACCATTCTCTCTCTCTCTTTCCTTCATCTCTTTTTCTCACATCACATACATCCTCTTTCTCCCTTCTTCTTCTTCTCCTTGTTTTATGGACAAAGGATGGGGACTCACCCTTGATACCTCTTCCTCCCAATCTCTCTCATTATTTCCTTCCAAACAACCTTCCACTTCTTTCTCCAAACTTACCAGCGACACCATGTTCCCTCTCCTCGGATTCCCCGTCAACCTTAGCCGTCCTTCTGTCAAGGACGACGAACACAACCGCAAAGTCGTCGGTGAAGTCGACTTCTTCTCTGACAGAATCACCAAACCAACATCCCCACCCTCCCACGACCAACACGTTAAACCCAACATCGTCAAGAAGGAAATTCTTGAAACACCTCTCCACGTTAATACTGGTTTACAGCTCCTTACTGCTAACACTGGGAGTGATCAATCTACCGTCGATGATGGGGTTTCATCGGATGCAGAAGATAAGCTAGCCAAAACCACCGAGCTTGCACAGATGCAAGTGGAGCTTCAACGCATGAACGCGGAGAACAAGAAGCTGAAAGAGATGCTAAGCCATGTGACCGGTAACTACACCGCCTTGCAGATGCATCTTATGACATTAATGCATCAGAACCAGCGCACGGAGAACACAGAAAATGAGGTTGTTCAGGGAAAGGTCGGGGATAAAACTTATGCTGTCGGTGGAGGAAAGATTCCAAGGCAGTTTCTTGATATAGGTCCCAGCGGCGCAGCCGAAGTAGATGATCAAGTGTCTGATTCTTCTTCGGATGAGAGAACACGATCGAGCACACCTCAGAACAATAATAATGAAGTTGGAACAAGAGATGGTGCGAAAAATGTTAATGGCAAAAGAGAGTTGGGAAGGGAAGGGAGTCCAGACTCAGAATCACAAGGTTGGGGTCCTAATAAGCTTCAGAAAGTTAGCCCCTCCAATGCAATCGACCAGTCCACTACAGAAGCCACAATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCCGAAGCTCCCATGATAAGCGATGGGTGCCAATGGCGAAAATATGGACAAAAAATGGCCAAGGGGAACCCATGTCCTCGAGCATATTATAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCCGAGGATAGAACAATTTTGGTAACAACATATGAAGGTACACATAATCATCCACTGCCACCTGCTGCTATGGCCATGGCGTCAACCACTGCAGCTGCTGCTAGCATGTTGCTGTCAGGGTCAATGTCCAGTGCAGATGGAATAATGAACCCAAATCTGCTAGCCAGAGCAATTCTTCCATGCAATTCTAGCATGGCAACACTTTCAGCTTCAGCACCATTTCCAACTGTGACTTTGGACCTCACACACAACCCAAACCCATTACAATTCCAGAGACCTTCTACCCCATTCCAAGTGCCCTTCCTCCAAGGGCAGCCTCAGAACTTTGGGTCCGGAGCCACCCCAATGGCACAAGCACAAGCACTTTATAATCAATCAAAATTCTCTGGTCTTCAGCTATCTCAGGAAGTAGGTTCTTCCCAGTTGACCGCACAAGCTACTAGACCACCCTTACAGCCTAGCCAGCAACCCTCGTCGGCTGATACAGTCAGTGCCGCGGCCGCCGCTATCACCTCCGATCCAAACTTCACCGCCGTCCTCGCCGCCGCAATCTCCTCTATCATAGGCGGTGCTCATAATGCAAACAACACCACCAATAACAACAACAGCACAAGCAGGACTACCATTAGCAGTTTTTCAGGAAACTGA	1836	0.482	MKSGAGWEVLHFLIPFSLSLSFISFSHITYILFLPSSSSPCFMDKGWGLTLDTSSSQSLSLFPSKQPSTSFSKLTSDTMFPLLGFPVNLSRPSVKDDEHNRKVVGEVDFFSDRITKPTSPPSHDQHVKPNIVKKEILETPLHVNTGLQLLTANTGSDQSTVDDGVSSDAEDKLAKTTELAQMQVELQRMNAENKKLKEMLSHVTGNYTALQMHLMTLMHQNQRTENTENEVVQGKVGDKTYAVGGGKIPRQFLDIGPSGAAEVDDQVSDSSSDERTRSSTPQNNNNEVGTRDGAKNVNGKRELGREGSPDSESQGWGPNKLQKVSPSNAIDQSTTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTAAAASMLLSGSMSSADGIMNPNLLARAILPCNSSMATLSASAPFPTVTLDLTHNPNPLQFQRPSTPFQVPFLQGQPQNFGSGATPMAQAQALYNQSKFSGLQLSQEVGSSQLTAQATRPPLQPSQQPSSADTVSAAAAAITSDPNFTAVLAAAISSIIGGAHNANNTTNNNNSTSRTTISSFSGN*	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu6g1538	611	PANTHER	WRKY TRANSCRIPTION FACTOR 6	73	598	-	-
	Pvu6g1538	611	MobiDBLite	consensus disorder prediction	294	308	-	-
	Pvu6g1538	611	Coils	Coil	172	206	-	-
	Pvu6g1538	611	MobiDBLite	consensus disorder prediction	312	339	-	-
	Pvu6g1538	611	ProSiteProfiles	WRKY domain profile.	350	416	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g1538	611	MobiDBLite	consensus disorder prediction	242	339	-	-
	Pvu6g1538	611	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	73	598	IPR044810	GO:0003700
	Pvu6g1538	611	MobiDBLite	consensus disorder prediction	588	611	-	-
	Pvu6g1538	611	MobiDBLite	consensus disorder prediction	273	292	-	-
	Pvu6g1538	611	SMART	WRKY_cls	355	415	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g1538	611	Pfam	WRKY DNA -binding domain	357	414	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g1538	611	Gene3D	WRKY domain	340	417	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g1538	611	SUPERFAMILY	WRKY DNA-binding domain	348	416	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g1538	611	MobiDBLite	consensus disorder prediction	535	556	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu6g1538	Pvu-Chr6	26094790	26097688	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu6g1538	43	598	WRKY Transcription Factor Family	AT1G62300	51.078	9.52e-158	462

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pvu6g1538		WRKY	7.4e-24	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu6g1538	6	26094790	26097688	Pvu6g1538	6	26094790	26097688	ECH
	Pvu5g1199	5	33530600	33533721	Pvu6g1538	6	26094790	26097688	ECH
	Pvu11g1049	11	11097802	11100927	Pvu6g1538	6	26094790	26097688	ECH
	Pvu6g1538	6	26094790	26097688	Pvu11g1607	11	40925274	40928159	ECH