Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0894 ATGAACGGTAAGGCTAATGTCACCAAAGAACTCAACGCAAAGCACAAGAAGATACTGGAAGGACTTCTTAAATTACCAGATAATAGAGAATGTGCTGATTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGTGTGCATATATCAAAGGTTCGTTCTGCAACCCTTGACACTTGGCTTCCGGAGCAAGTTGCATTCATTCAATCAATGGGAAATGAGAAAGCAAATAACTACTGGGAAGCAGAATTACCACCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGATGAGAAGAGATGGGTTCCAAGAGATGGGAATCCAAAAACACCTTCTGGATTGCGGGAAGAAAGAAGTCCTTCACATTGGCAGAGGCCTGTAGAGAGAAGTGGTCATGCCGCTGTTTCTGAAACTACTTTTCAGGAAAGGAAGAAATTCCCACCGTCAAAAGCAATTCCTGCTACAAGAAATAGTGTTCCTGTTCCTGCTCCTGCTCCACCCAAAGCACCGGAGCAAGTAACTCATATTACCAAACCTCGGCCTGTTGAGAAAGTGGAACCATTAGCACCACAGCCACGAGCTGAATCTGCAAAGCTGGCTATGGACGCAGCTCAAAATACCCCTCCTAAAGTTGACTATGCTACAGACCTTTTCAACATGTTGTCTATGGATGTCCCCAACGAAAATGGCTCTGAGTCACCCAGTAGAACTACTGATGATAATCTCTGGGCAGGTTTTCAGTCTGCTGCCGAGGTGTCAACAGCTGAGAAGACTAGTCCGCTGAAAGCAGCTGATAATAGTACTCCGCCATCTGCAAGTGGTATTGAGGATCTTTTCAAAGATTCACCTTCTATGATGCCAAGCTTAACTCCAGGAAAGCCACAGAAAGATGTTAAAAATGATATAATGAGCCTCTTTGAGAAGGGCAATATGGTGTCTCCATTTTCTATGCATCAGCAGCAGCTTGCCATGCTTGCACAGCAACAGTCTCTTCTAATGGCTGCTGCAGGTAAATCAGGTGGGGATCCCAGGTATCCTCCCGCTGGCATGCAAGAACCTAGACCAAATGTTCCTATGCAAAGTTGGCCAGCTACTGGCTACTTGATTTCTGGAGTACTGCCCATGCAGGGTCAGATAAGGAATATGACCCCAACACATTTTGCTGGGAGCTCTGTACAATATCAACCATCCAGTTTATATGGTATGGGGCAAGTTCCACCGCCAGTTAACGGTATGATGACGACAATGGGAGCGAATAAACCTCAGTCAGGAGCTCCAGTGTCATCTAGCAGTACACAGTCAGCGAAGGATTATGATTTTTCCTCCTTAACACACGGGATGTTTGCGAAGCAGTGA 1419 0.4489 MNGKANVTKELNAKHKKILEGLLKLPDNRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANNYWEAELPPNYDRVGIENFIRAKYDEKRWVPRDGNPKTPSGLREERSPSHWQRPVERSGHAAVSETTFQERKKFPPSKAIPATRNSVPVPAPAPPKAPEQVTHITKPRPVEKVEPLAPQPRAESAKLAMDAAQNTPPKVDYATDLFNMLSMDVPNENGSESPSRTTDDNLWAGFQSAAEVSTAEKTSPLKAADNSTPPSASGIEDLFKDSPSMMPSLTPGKPQKDVKNDIMSLFEKGNMVSPFSMHQQQLAMLAQQQSLLMAAAGKSGGDPRYPPAGMQEPRPNVPMQSWPATGYLISGVLPMQGQIRNMTPTHFAGSSVQYQPSSLYGMGQVPPPVNGMMTTMGANKPQSGAPVSSSSTQSAKDYDFSSLTHGMFAKQ* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0894 472 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Pvu5g0894 472 MobiDBLite consensus disorder prediction 438 459 - -
Pvu5g0894 472 PANTHER ARF GTPASE ACTIVATOR 1 472 - -
Pvu5g0894 472 CDD ArfGap 19 117 - -
Pvu5g0894 472 MobiDBLite consensus disorder prediction 123 146 - -
Pvu5g0894 472 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Pvu5g0894 472 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Pvu5g0894 472 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Pvu5g0894 472 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Pvu5g0894 472 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Pvu5g0894 472 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Pvu5g0894 472 MobiDBLite consensus disorder prediction 274 294 - -
Pvu5g0894 472 MobiDBLite consensus disorder prediction 123 194 - -
Pvu5g0894 472 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Pvu5g0894 472 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 472 IPR044520 GO:0005096
Pvu5g0894 472 MobiDBLite consensus disorder prediction 274 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0894 Pvu-Chr5 22435339 22440413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0894 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 1.92e-29 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0894 5 22435339 22440413 Pvu11g1608 11 40936824 40939793 PCT