Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0838 ATGGGTGGTGGATTTAGGGTCCTTCACTTAGTTAGGCCATTTCTCTCGTTTCTTCCCGAGGTTCAAACTGCTGACAGGAAAGTGCCATTTAGAGAAAAGGTCATATATACTGTGATCTCTCTCTTCATTTTCCTGGTCTGTAGTCAGCTTCCTCTATATGGGATTCACTCAACAACAGGTGCGGATCCATTTTATTGGATGCGTGTTATTCTCGCGTCAAACCGTGGAACTGTCATGGAACTTGGAATCACTCCCATTGTGACTTCTGGGCTGGTGATGCAACTTCTGGCTGGGTCAAAGATCATTGAAGTGGACAACAACGTACGTGAGGATCGAGCACTATTAAACGGAGCGCAGAAGCTTCTAGGTATTCTGATAGCTGTTGGTGAGGCTGTTGCCTATGTTCTTTCGGGGATGTATGGTAGTGTGGGGCAACTTGGAGTAGGAAATGCCATCCTCATCATCATCCAGCTCTGTTTTGCGGGTATAATTGTGATATGTCTAGATGAGCTTCTCCAAAAAGGATATGGTCTGGGGTCTGGAATTTCCCTATTCATAGCAACTAATATCTGCGAAAACATTATATGGAAGGCATTTAGCCCCACCACCATTAATAGTGGACGTGGAGCTGAATTTGAAGGTGCTGTCATTGCTCTGTTCCATTTGTTGATAACTAGATCAGACAAGGTCCGGGCTCTACGGGAGGCATTTTACAGGCAGAATCTTCCGAATGTGACAAATTTGCTTGCTACTGTCTTGATCTTCCTAATTGTAATATACTTCCAAGGTTTCCGTGTAGTCTTGCCAGTAAGGTCAAAGAATGCTCGTGGACAGCAGGGTTCATATCCAATCAAATTGTTTTATACCTCAAACATGCCCATCATTCTTCAGTCTGCTCTCGTTTCCAATCTCTACTTCATCTCCCAGCTGCTCCATCGTAAGTACAGTGGAAACTTCTTTGTTGATCTATTGGGAAAGTGGAAGGAATCTGAATATGGAGGTGGTCAGTCAGCACCTGTTGGTGGTATTGCGTACTATATCACCGCACCATCCAGCTTAGCTGATATGGCGGCCAATCCCTTCCATGCCCTATTCTATCTTGTGTTTATGCTTTCAGCCTGTGCCTTGTTCTCTAAAACATGGATCGAAGTCTCTGGTTCATCTGCTAAAGATGTTGCCAAGCAGCTGAAGGAACAACAAATGGTAATGCCTGGACACCGTGAGTCCAACTTGCAGAAAGAACTGAATCGATATATTCCCACTGCTGCAGCATTTGGAGGCATGTGTATCGGTGCCTTGACAGTGTTGGCAGATTTTATGGGCGCCATTGGTTCAGGAACTGGAATATTGCTTGCGGTAACGATCATCTATCAGTACTTTGAGACATTCGAGAAGGAGAGAGCTAGTGAGCTTGGGTTCTTTGGTTTCTGA 1431 0.4479 MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIIQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRSDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFFVDLLGKWKESEYGGGQSAPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0838 476 PIRSF SecY_Sec61alpha 8 471 IPR002208 GO:0015031|GO:0016020
Pvu5g0838 476 SUPERFAMILY Preprotein translocase SecY subunit 10 466 IPR023201 -
Pvu5g0838 476 ProSitePatterns Protein secY signature 1. 77 96 IPR030659 -
Pvu5g0838 476 Gene3D SecY subunit domain 9 474 IPR023201 -
Pvu5g0838 476 Pfam Plug domain of Sec61p 42 76 IPR019561 -
Pvu5g0838 476 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 1 476 IPR002208 GO:0015031|GO:0016020
Pvu5g0838 476 Pfam SecY 77 459 IPR002208 GO:0015031|GO:0016020
Pvu5g0838 476 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 31 467 IPR002208 GO:0015031|GO:0016020
Pvu5g0838 476 PANTHER F9K20.24 PROTEIN 1 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0838 Pvu-Chr5 19012165 19015908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0838 1 476 Miscellaneous Gene Families AT2G34250 93.277 0.0 907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0838 5 19012165 19015908 Pvu5g0838 5 19012165 19015908 ECH
Pvu5g0838 5 19012165 19015908 Pvu11g1616 11 41097508 41105418 PCT