Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0772 ATGGCTCCAAGGGACAGAGCCACCGCACTCGCCGGACCCGGTCCAAGCCCAACACAGGCCCACAAAGAGATTCGCTACAGAGGCGTCAGGAAACGCCCTTGGGGCCGCTACGCCGCCGAGATCCGCGACCCGGGCAAGAAAACCCGCGTCTGGCTTGGCACCTTCGACACCGCGGAAGAAGCCGCACGAGCCTACGACACCGCTGCGCGCGAGTTCCGAGGCGCCAAAGCCAAGACCAATTTCCCCACACCTTCCGAGCTTCTCGTAAACAACCATAGCAGCAACAACAACAACGCGCGTAGCCCTAGCCAGAGCAGCACGCTCGACTCTTCCTCTCCGCCGCCGCCGCCGCTCCTTGACCTTACGCTCACCCCTCTGTCTGCCGCGGTCCTGCCAGTGGCACGTCCGGTCCTCTTCTTCGATGCCTTCGCGCGTGCAGACGCCGTGGCCGCCGTCGGCCGCCGCGACACGTGTGGCTTCGGACGTCCGGTCTCCGATTTCCGTCGCGGCGACTCAAATTCCGAGCGACGTGCGCTCCTGGATCTCGATCTCAACGTGCCTCCTCTTCCCGAGGTTGCGTGA 582 0.6478 MAPRDRATALAGPGPSPTQAHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGAKAKTNFPTPSELLVNNHSSNNNNARSPSQSSTLDSSSPPPPPLLDLTLTPLSAAVLPVARPVLFFDAFARADAVAAVGRRDTCGFGRPVSDFRRGDSNSERRALLDLDLNVPPLPEVA* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0772 193 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Pvu5g0772 193 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Pvu5g0772 193 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Pvu5g0772 193 MobiDBLite consensus disorder prediction 83 108 - -
Pvu5g0772 193 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Pvu5g0772 193 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 164 - -
Pvu5g0772 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 19 164 - -
Pvu5g0772 193 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Pvu5g0772 193 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Pvu5g0772 193 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Pvu5g0772 193 MobiDBLite consensus disorder prediction 76 117 - -
Pvu5g0772 193 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Pvu5g0772 193 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0772 Pvu-Chr5 13295710 13296859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0772 13 154 AP2-EREBP Transcription Factor Family AT3G15210 60.625 1.19e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu5g0772 AP2 6.9e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0772 5 13295710 13296859 Pvu6g1900 6 29213340 29215073 ECH
Pvu5g0772 5 13295710 13296859 Pvu5g0772 5 13295710 13296859 ECH
Pvu5g0772 5 13295710 13296859 Pvu11g1292 11 26734318 26735830 ECH