Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0765 ATGGACATCAAGAGCAGAGATAGGAGGCAAGTGTCAATTGAAAAGGTGAGGAGGGACAGCCCGGTTGAAATAGAAGATGAGGAAGAGGAGGAGGATGAAAGTGTGGCTGGAGGTGAGGGCTTTCTTGCAGAAGATGAGAGGAAGAAGGGTGGTGGTGGTGGTGGTGGGAGAAGAGGGTCTACTGGAGGTGGAGTTTCTCCACCTGCTTGTCAGGCTGAGATGTGTTGTGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCACCTTTTGTTATGGTTGCAGGAATGAGGCAGAGATTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGCAGAGTTTGACGAAGCTAAAAGAAGCTGCCGGAGACGGTTGGCAAGACACAATGAGCGGCGCCGGAAGAGCAATGCTGAAACTTGCAATGAAGGATGCAGCGGCAGCAAAGGGCAGCACCCTGCAGAAAGCCTCTGCAGAAATGCTGATGACTGGGGAAGAATTCAGATGAACATGGCAAGGAATTCTGGTTACAGGTCCTTCCACTTCAGATGA 576 0.5087 MDIKSRDRRQVSIEKVRRDSPVEIEDEEEEEDESVAGGEGFLAEDERKKGGGGGGGRRGSTGGGVSPPACQAEMCCADLTVAKRYHRRHKVCELHSKAPFVMVAGMRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNAETCNEGCSGSKGQHPAESLCRNADDWGRIQMNMARNSGYRSFHFR* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0765 191 SUPERFAMILY SBT domain 68 148 IPR036893 GO:0003677|GO:0005634
Pvu5g0765 191 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 10 191 IPR044817 GO:0003677
Pvu5g0765 191 Pfam SBP domain 70 143 IPR004333 GO:0003677
Pvu5g0765 191 Coils Coil 120 140 - -
Pvu5g0765 191 Gene3D - 60 131 IPR036893 GO:0003677|GO:0005634
Pvu5g0765 191 MobiDBLite consensus disorder prediction 23 39 - -
Pvu5g0765 191 MobiDBLite consensus disorder prediction 1 22 - -
Pvu5g0765 191 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10 191 - -
Pvu5g0765 191 MobiDBLite consensus disorder prediction 1 66 - -
Pvu5g0765 191 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0765 Pvu-Chr5 12924825 12926343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0765 56 158 SBP-box Gene Family AT1G53160 63.107 1.41e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu5g0765 SBP 2.8e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0765 5 12924825 12926343 Pvu6g1908 6 29283875 29285790 ECH
Pvu5g0765 5 12924825 12926343 Pvu11g1709 11 43283587 43284947 ECH
Pvu5g0765 5 12924825 12926343 Pvu5g0765 5 12924825 12926343 ECH
Pvu5g0765 5 12924825 12926343 Pvu11g1709 11 43283587 43284947 PCT