Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0712 ATGGATCAAATAACGGATTCAGAGATGGATCAACAGAGACGAGGCTATCATCATTCTGAGCCCTGTATCCTTACTAGAGGAACCACAAACATCTCGCAGCCGAATAATATGCATGCAATGGTGAGAGCTTCTGGGAACACAACTAATGTTGATTCTCACTTTCTGCCAGATGCTTATGACAATGCTAGGGTGTATGGGGTTACACAATACAATGGCATTCAGCATCCCCATAATCTTGATATGGGTGTGCCAGCTGCAGCCAACTTATATTATTCTGGCATTAATCCTTCTTCTGGTGCTGGCGTTTTCCCTCTGCCTCTAAATCACAGAGCCTCTGATCAGTTGCCTGGTTCAAGTACATTTGCAGTTGCTGGGGTTTCTTCAGATAATTTTGGAAGAAGTTCTGGTTTCATGGATGATGTTAGAGGTCCTTACAAAAGGAAAGTTGCTGAAGGGATGAGAGGAAATTACCAATATTTTAATGCATCATCTAGCTCTTCAATTGCTCCTCCTAATGCAAGACACACTACTGATGGTGTTGCTATGATGGATGCTGCACCATTTTCATTCCGCATCCCTTCACTTGTGGAAGTAGGACCACATGGTAGTGCATGGAGCAGGGCAGGTGAGTCCATTATGGTGCATGACCATAATCATTTGATTCATGGAAATTATTTAGGACAGCACTTTCAGCCAGCTGCTCCTCCGTGGTTGGACCAGCAGATGAACGGTAACAATAATGATGGCCATACTACACCCTGGAATCAGTCGCTTCCAATGCCTTATGTACAAGGACCTACTGTAAATGGAGGTTCATTAGATAGTGCAAGTATGGGCTTGCAGAGATATCATGATCCAGCTGGAAGCCGAAATGGCCTCAGGTTTCCTCACCCTCTTCCTGTCAACCAACAGCACCACAATTATCATCACCCAGCACTGCCTATGCAAGGAGTAAGAGGCCACAATATCAACTTTCACCCTGCAGTAAGTGCAGCATCATTTAGAGTTCCAATAAATCCTTCACGTGGTGTTGCTATCCCAGCACAGCCTGGTTTTGAGTTAGGTCCCAGGCATGTTGGCCCTGCACCATCAGCTGGCCTCCGGATTTACCGACCTCATAGAGGGGCTGTGCCTGAAACAACTCTTGGACATCGAAGTCTTCCACCTGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATTTAGTTGATCATCACAGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTCCTTGCATTGGGTGAGAGGATTGGCAATGTTAGCACCGGTTTAGCAGAGGAAACAATTACAAATCAATTGAAAACAAAATCTTATTCAACAAATGCTGCTGGTATTAATCTGGAGGAGGAAGCTTGTGATGATCAGGAAACAGATTCTTGTATAATATGTCAGGAAGAATTCAAGAACCAGGAGAAGATTGGAGTTCTTCGATGTGAGCATGAATATCATGCAGATTGCTTAAGGAAATGGTTGGTGGTGAAAAATGTCTGCCCCATATGCAAATCAGAGGCTTTGACTCATGGAAGGAAGGATGTATAG 1587 0.4417 MDQITDSEMDQQRRGYHHSEPCILTRGTTNISQPNNMHAMVRASGNTTNVDSHFLPDAYDNARVYGVTQYNGIQHPHNLDMGVPAAANLYYSGINPSSGAGVFPLPLNHRASDQLPGSSTFAVAGVSSDNFGRSSGFMDDVRGPYKRKVAEGMRGNYQYFNASSSSSIAPPNARHTTDGVAMMDAAPFSFRIPSLVEVGPHGSAWSRAGESIMVHDHNHLIHGNYLGQHFQPAAPPWLDQQMNGNNNDGHTTPWNQSLPMPYVQGPTVNGGSLDSASMGLQRYHDPAGSRNGLRFPHPLPVNQQHHNYHHPALPMQGVRGHNINFHPAVSAASFRVPINPSRGVAIPAQPGFELGPRHVGPAPSAGLRIYRPHRGAVPETTLGHRSLPPVGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLAEETITNQLKTKSYSTNAAGINLEEEACDDQETDSCIICQEEFKNQEKIGVLRCEHEYHADCLRKWLVVKNVCPICKSEALTHGRKDV* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0712 528 SUPERFAMILY RING/U-box 469 521 - -
Pvu5g0712 528 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 130 525 - -
Pvu5g0712 528 SMART ring_2 476 516 IPR001841 -
Pvu5g0712 528 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 130 525 IPR045191 GO:0061630
Pvu5g0712 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 437 521 IPR013083 -
Pvu5g0712 528 Pfam Ring finger domain 474 517 IPR001841 -
Pvu5g0712 528 ProSiteProfiles Zinc finger RING-type profile. 476 517 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0712 Pvu-Chr5 11049361 11053289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0712 393 521 C3H Transcription Factor Family AT2G15530 45.926 1.58e-35 139
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0712 5 11049361 11053289 Pvu5g0712 5 11049361 11053289 ECH
Pvu5g0712 5 11049361 11053289 Pvu11g1589 11 40295560 40296870 PCT