Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0693 ATGTCGCATACCACCGGCGTGGATGCCTTCGCCGATCGCTTCCGCCACTCGCTCAGCTGCAACAACGACACCGGCAACATTAACAAGCCCGACTTCCGAGAACTCGATCTGGGCTCCCCGGTGTCACCATTGCGTACCACGCGCGCCCCGGCCGCGAGTACCAGCTCAAGCTCATCTGGGTCCTTCTCGGGTCGAACCGGGCCCAACCAGGTTCCCCGAAAGCCCGAATCTTCGCACACCAATAGTAACACTAACAACAGCAGTAGTAGCAACAACAACAACAACTCCGGCGAGCTTTCTGGTTCGAGCGAGAACAGCCCCACCGCCCGTGGCTTCAAACCGGGTCATACGAGATCCGACTCTGGATCCGCGCCGGGGCCGCTGCTGTACTCCGGCCAGACTGCTACTTCGCCGGCGATGAATGTTCTCCCCACCGGGAACATCTGCCCCTCCGGGAAGATCTTGAAGGCGGGGATGGGGATGGTGGCGAATCGGAGTAGTAGAAGCGATGTTTTGGGGTCCGGCATGGGGAACTACGGCCACGGGAGCATAATGCGCGGCGGCGGAAAGGCGGAGCCGGTGAGCTCACGCGGCGGTGGCGGCAATGAGGCAGTGAAGAGAGGTGGGCACGTGCAGAGTGTGGATCCAGAGGAATTGAAGAGATTGGGGAATGAGTGTTATAAAAGAGGGAACTTTGCTGATGCGTTAAGTCTTTATGATCGCGCGATTGCGATGTCGCCGGCGAGTGTCGCTTACCGGAGCAACCGCGCGGCGGCGCTGACCGGGCTGGGACGTTTTGGTGAGGCTGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATCCTAATTATGGAAGGGCTCATCAGCGTTTAGCTTCTCTTTTCCTCAGGTTAGGACAAGTTGAGAATGCTAGGAAGCACCTTTGCCACCATGGGATGCAACCAGATCCATCGGAGATGCAGAGGTTGCAAGTGGTGGAAAAGCATATCAGCAAATGTGGAGATGTAAGGAGGATAGGGGATTGGAAGAGTGTTCTCAGGGAGGTTGATGCTGCCGTTGCTGCCGGAGCGGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCGTTTTTGAAGCTCCACCAGATTGATGATGCAGAAACAGTTTTGTTCCATATACCAAAATCAGAGTTGCACACTAATTCCACTTCTCAGGCAAGATTTTTTGGGATGGTTTCTGAGGCCTATTTCTATTTTGTGAGAGCACAGATTGAGATGGCATTGGGAAGGTTCGAGAATGCCGTTACAGCTGCTGAGAAAGGCAGTCAGATTGATCCCCGGAGTGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTGGCTAGGGCTCGAATGCGTGGCAATGATCTCTTTAAGTCTGAAAGGTACACCGAAGCTTGCTCGGCTTATGGGGAAGGTTTGAGACTGGACCCTTCCAATTCTGTACTATATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCAGTGGGAAAGATCAATTGAAGACTCCAACCAAGCTTTACACATCCAACCAAATTACACCAAGGCCCTTCTTCGGAGGGCTGCATCAAACAGCAAGCTAGAACGATGGGAGGAAGCTGTCAAAGATTATGAGATCTTGCGGAGAGAACTTCCAAATGATAACGAAGTTGCTGAATCTCTTTTCCATGCACAAGTTGCCCTAAAGAAATCACGTGGGGAAGAAGTATATAATTTAAAATTTGGTGGCGAAGTGGAAGAAGTATCAGGTCTGGAGCAGTTTAGAGCTGCAATATGTTTACCAGGTGTATCTGTTGTCCATTTTGAAGTTGGATCGAACTCACAATGCAAACAAATATCACCATTTGTGGATACACTATGCGGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAAGAAAGCCCAACAGTTGGTACTGCGGAGAACGTTAGAATTGTACCAACCTTCAAGATATACAAAAATGGCAGCCGAGTGAAGGAAATTGTTTGCCCCAGTCGTGAGATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2067 0.5094 MSHTTGVDAFADRFRHSLSCNNDTGNINKPDFRELDLGSPVSPLRTTRAPAASTSSSSSGSFSGRTGPNQVPRKPESSHTNSNTNNSSSSNNNNNSGELSGSSENSPTARGFKPGHTRSDSGSAPGPLLYSGQTATSPAMNVLPTGNICPSGKILKAGMGMVANRSSRSDVLGSGMGNYGHGSIMRGGGKAEPVSSRGGGGNEAVKRGGHVQSVDPEELKRLGNECYKRGNFADALSLYDRAIAMSPASVAYRSNRAAALTGLGRFGEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVENARKHLCHHGMQPDPSEMQRLQVVEKHISKCGDVRRIGDWKSVLREVDAAVAAGADSSPQLFMCRAEAFLKLHQIDDAETVLFHIPKSELHTNSTSQARFFGMVSEAYFYFVRAQIEMALGRFENAVTAAEKGSQIDPRSVEVAVLLNNVRMVARARMRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALHIQPNYTKALLRRAASNSKLERWEEAVKDYEILRRELPNDNEVAESLFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAICLPGVSVVHFEVGSNSQCKQISPFVDTLCGRYPSINFLKVDIQESPTVGTAENVRIVPTFKIYKNGSRVKEIVCPSREMLEHSVRHYSF* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0693 688 Gene3D Tetratricopeptide repeat domain 214 574 IPR011990 GO:0005515
Pvu5g0693 688 Pfam Tetratricopeptide repeat 222 282 - -
Pvu5g0693 688 Pfam Tetratricopeptide repeat 459 519 - -
Pvu5g0693 688 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 9 686 IPR044534 -
Pvu5g0693 688 Pfam Tetratricopeptide repeat 410 439 IPR019734 GO:0005515
Pvu5g0693 688 MobiDBLite consensus disorder prediction 183 217 - -
Pvu5g0693 688 Pfam Thioredoxin 603 678 IPR013766 -
Pvu5g0693 688 ProSiteProfiles TPR repeat profile. 216 249 IPR019734 GO:0005515
Pvu5g0693 688 CDD TRX_family 593 677 - -
Pvu5g0693 688 SUPERFAMILY Thioredoxin-like 518 677 IPR036249 -
Pvu5g0693 688 SUPERFAMILY TPR-like 216 439 IPR011990 GO:0005515
Pvu5g0693 688 MobiDBLite consensus disorder prediction 17 133 - -
Pvu5g0693 688 ProSiteProfiles TPR repeat profile. 488 521 IPR019734 GO:0005515
Pvu5g0693 688 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 9 686 - -
Pvu5g0693 688 MobiDBLite consensus disorder prediction 46 112 - -
Pvu5g0693 688 SUPERFAMILY TPR-like 458 571 IPR011990 GO:0005515
Pvu5g0693 688 SMART tpr_5 488 521 IPR019734 GO:0005515
Pvu5g0693 688 SMART tpr_5 216 249 IPR019734 GO:0005515
Pvu5g0693 688 SMART tpr_5 408 441 IPR019734 GO:0005515
Pvu5g0693 688 SMART tpr_5 250 283 IPR019734 GO:0005515
Pvu5g0693 688 SMART tpr_5 454 487 IPR019734 GO:0005515
Pvu5g0693 688 SMART tpr_5 522 555 IPR019734 GO:0005515
Pvu5g0693 688 Gene3D Glutaredoxin 581 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0693 Pvu-Chr5 10346195 10350324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0693 230 552 Glycosyltransferase AT3G04240 21.407 5.24e-10 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0693 5 10346195 10350324 Pvu5g0693 5 10346195 10350324 ECH
Pvu5g0693 5 10346195 10350324 Pvu11g1659 11 42015306 42019470 PCT