Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2723 ATGGGTGCCAACTGCAGACACGTTTTTCACAGATTACAGAGTTTGAGTTTTGCCACTTATTGGAAAAAAAGCACCACGCCAACCGGCAGACGGATTTTCCACAGGGATGTGGAAAAGGAGGAATTCCAGTATGCCAGCACTCAATGTCTCTCCTCCTACTACAGTGTCTTTGTGGTTCGTCTAGCAATCATGGCCATGCTAGCCATCTTGATTGGTCTGCTCACTTTTCTCACATGGCATTTCACAAAGATTTATACAACAAAGTCTCTTAATAGCTTGGCATATGACCTGCGTTATGAACTTCTGCAACGCCCCATCTTGAGGATGTGGAACATTTTGAATTCTACTGCTGAAATTACTACTGCTCAGGTTAAGCTGTCTCAGTATGTGATCAGAAGCCACACCACCAACCTTGCCACTCAAGCAGACCAAGTTGAGATGTATGATGCGATGAGAGCTGTGACGTGGGCACTGTTTGCCAGTAAAAAAGCTCTCAATTCCATAACTGTCAAATACAAGAATGGATTTGTCCAAGCATTCCATAGAGACCTGAAGGAAAACAACACCTTTTACATTTATTCTGATATTGCAAATTACTCCATGGCTGCCAGTGACCACAAGGAGATCAATATTCATGGAAACAAGTCTGCAATTTGGTATCGGGAACCTCTTGATCCAGTCAGTGGAGAGAAGATTGGAAAAGTAATGCCAATTGCACCAGAAGACTCAATCAATATAGCAGGCCTCTCCCAAGTACCTGATGGTGTAGCTTCATGGCATGTTGCTGTTAGCAAGTTTACAGATTCACCATTGCTTTCTGCGGCATTGCCAGTGTGGGACTCCTCAAATAAAAGCATTGTGGCAGTTGTGGGTGTCACAACTGCACTTTATAGTGTGGGGCAGCTCATGAAAGAGCTAGTTGAGTTGCACAGTGGTCATATGTATTTGACCAACCAAGAGGGTTACTTACTTGCAACTTCCACAAATGCACCTCTACTGTCAAATTCTACAAAGCCTCCTAAGCTTAAGATGGCTGTTGACTGTGAAAATGAAGTAATAAGAGAGGGAGCTCAGTGGCTACAGAAAACCTATGGCAACAATTTCCCTCAAAGTCATGAACTTCATGTAGAGAATGTCAAGCTAGGTCCCCAGCAATATTACATCGACTCATTCTTCCTGAACTTGAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCTAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCATTCAAAACATTGGTCATTCTTATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATACTGACAAATGGAGTGTCAAAGGAAATGAAACTAAGAGCAGAACTGATCAGCCACCTGGAAGCAAGAAGGAAAGCAGAGGCATCAAGCAACTATAAAAGTCAATTTCTTGCAAATATGAGTCATGAATTGAGGACACCAATGGCAGCAGTAATCGGGTTACTCGACATTCTTATATCTGATGACCGTCTCACAAATGAGCAATGTGCAACAGTTACTCAAATTAGAAAATGCTCAACTGCTCTGCTTCGTCTACTTAATAACATCCTGGACCTAAGCAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGATTTGGGGCGGGAACTTGAAGGGCTGGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTCTAGACTTGTCTGATGATATGCCAAAGCTAGTTCGAGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCAAATTTAATCAACAACTCCATTAAGTTTACTCTATCCGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATGCTTGCAGTGATGATACAAATTTTCCACTAGAGCAAAAGAAATCACGGTGTTCACAGAAGAATAGAGCAAAACAACATGAAAACCATGCAAAGAGGACTTCCAACAGAGATAACAAAATAGTACTTTGGTTTGAAGTTGATGATACAGGATGTGGTATTGATCCAAGTAAATGGGAATCCGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGCACGGGTCTTGGTCTTTGCATCGTCAGAACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGGGCCCAGGAACACTGATGCGGTTATACTTGCGTCTGAGTGCACCTCTGGATGCCACAGAACAACATTGTCAAGTAGATTTTGCTAACAAAGGCTTAGTGGTACTTCTTGCACTCCATGGCAGTATGGGTCGATCTGTTACATCTAAGTGGTTACAGAAAAATGGGGTAATATCTATGGAGGCATCAGAATGGAATGGATTAACACAAATTCTTAGGGTACTCTTTCATGCTAGAAGTTCAGCTCATAATAATGGTTTTGATGCAAATTATTCAGTGCATGAAAATTTAAAGTCGAAACTACTGAGCATACAGGAATTGAGGAACCCAGTTTTTGTCATTGCTGTTGACATTGGTCTACTTGATTTGAGCACAGATATATGGAAGGAACAGCTTAATTTCCTTCACAAATACTTTGGGAGAGCGAAATTCGTGTGGATACTAAATCATGACTCCTCCAATACCATAAAGACGGAGCTTTGCAGGAAAGGACATACACTGACAGTGAACAAACCCCTCTACAAAACAAAAATGCTTCATATTTTGGAAACCATTATAAAGGAAAGAAGTGATGAACTACAAAAGAAAATTATGACTACTCCAAGAGCTACAGTGAAAGAGGGTTATTTGCATGAGAGTCTGGAGATTGATTATACTCAGTGTGATGTTGCAAGCTCAGATGGTTCTGACATATCTGAAACGGGAGGTTCTAATCCTGTTTGTGAAAGTGAAGATAAACAAAGAGAGAAGGTAGTGAGATCTGAATCATCATCACAACACCAGATAAATAACTTGGTTGGATTAGCAAATGGATATATGGAAGATAATAATCCTAGGAAGAAAGAGTTATGTCAGAGCAGCCTCAACTCTAACGATGTCACTGCGAATGACACACCAAAATCATCCTCCACCAAACAAGCATTGTGTGCAAAAGGTACTCAAGATGAAGATTCTGAATATGGTGAAACACGAAGGGCCAGTAGCTCAAGCAGAACAGTGAGTGGAAAGAAATCTCTTGAAGGTCTGAGGATATTGCTTGCAGAAGATACACCAGTAATTCAAAGGGTTGCAACCATAATGCTTGAAAAGATGGGAGCCATTGTTGTAGCCGTAGGGGATGGACAACAAGCAGTGGATGCTCTGAATAGCACGCCTGGTCTTGAAGATTGTAGAAGGGAGTCTAAGGAAAGAAACACAAGATCATCTCAAAATGAGATTCTCAGTTTCCCTCCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCCGGAAATCAGAAGTGGGAACTGGCTTGCACATTCCAATTGTTGCTCTTACAGCCCATGCAATGTCATGTGACGAAGCCAAGTGCCTAGAGGTTGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAACTGATGGAGTCCACCATTCTTTCACTCACAAGAAGGAAATTCTGA 3648 0.4142 MGANCRHVFHRLQSLSFATYWKKSTTPTGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMAMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSQYVIRSHTTNLATQADQVEMYDAMRAVTWALFASKKALNSITVKYKNGFVQAFHRDLKENNTFYIYSDIANYSMAASDHKEINIHGNKSAIWYREPLDPVSGEKIGKVMPIAPEDSINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTNQEGYLLATSTNAPLLSNSTKPPKLKMAVDCENEVIREGAQWLQKTYGNNFPQSHELHVENVKLGPQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNACSDDTNFPLEQKKSRCSQKNRAKQHENHAKRTSNRDNKIVLWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLYLRLSAPLDATEQHCQVDFANKGLVVLLALHGSMGRSVTSKWLQKNGVISMEASEWNGLTQILRVLFHARSSAHNNGFDANYSVHENLKSKLLSIQELRNPVFVIAVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWILNHDSSNTIKTELCRKGHTLTVNKPLYKTKMLHILETIIKERSDELQKKIMTTPRATVKEGYLHESLEIDYTQCDVASSDGSDISETGGSNPVCESEDKQREKVVRSESSSQHQINNLVGLANGYMEDNNPRKKELCQSSLNSNDVTANDTPKSSSTKQALCAKGTQDEDSEYGETRRASSSSRTVSGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAIVVAVGDGQQAVDALNSTPGLEDCRRESKERNTRSSQNEILSFPPYDLILMDCQMPKMDGYEATKAIRKSEVGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRKF* 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2723 1215 Pfam Response regulator receiver domain 1068 1204 IPR001789 GO:0000160
Pvu3g2723 1215 MobiDBLite consensus disorder prediction 949 965 - -
Pvu3g2723 1215 SMART HisKA_10 474 540 IPR003661 GO:0000155|GO:0007165
Pvu3g2723 1215 Gene3D - 542 740 IPR036890 -
Pvu3g2723 1215 Gene3D - 1044 1210 - -
Pvu3g2723 1215 ProSiteProfiles Histidine kinase domain profile. 481 739 IPR005467 -
Pvu3g2723 1215 MobiDBLite consensus disorder prediction 635 655 - -
Pvu3g2723 1215 Pfam His Kinase A (phospho-acceptor) domain 475 540 IPR003661 GO:0000155|GO:0007165
Pvu3g2723 1215 MobiDBLite consensus disorder prediction 1013 1058 - -
Pvu3g2723 1215 MobiDBLite consensus disorder prediction 949 969 - -
Pvu3g2723 1215 PRINTS Bacterial sensor protein C-terminal signature 664 678 IPR004358 GO:0016310|GO:0016772
Pvu3g2723 1215 PRINTS Bacterial sensor protein C-terminal signature 682 692 IPR004358 GO:0016310|GO:0016772
Pvu3g2723 1215 PRINTS Bacterial sensor protein C-terminal signature 699 717 IPR004358 GO:0016310|GO:0016772
Pvu3g2723 1215 PRINTS Bacterial sensor protein C-terminal signature 723 736 IPR004358 GO:0016310|GO:0016772
Pvu3g2723 1215 MobiDBLite consensus disorder prediction 1013 1035 - -
Pvu3g2723 1215 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1212 - -
Pvu3g2723 1215 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1212 - -
Pvu3g2723 1215 CDD REC_hyHK_CKI1_RcsC-like 1068 1207 - -
Pvu3g2723 1215 ProSiteProfiles Response regulatory domain profile. 1067 1211 IPR001789 GO:0000160
Pvu3g2723 1215 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 461 541 IPR036097 GO:0000155|GO:0007165
Pvu3g2723 1215 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 529 736 IPR036890 -
Pvu3g2723 1215 SMART REC_2 1066 1207 IPR001789 GO:0000160
Pvu3g2723 1215 CDD HisKA 475 536 IPR003661 GO:0000155|GO:0007165
Pvu3g2723 1215 Gene3D - 462 541 - -
Pvu3g2723 1215 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 587 737 IPR003594 -
Pvu3g2723 1215 SUPERFAMILY CheY-like 1064 1213 IPR011006 -
Pvu3g2723 1215 SMART HKATPase_4 587 739 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2723 Pvu-Chr3 49180437 49187253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2723 6 1212 Histidine Kinase Gene Family AT2G17820 64.128 0.0 1543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu3g2723 HATPase_c 4.2e-22 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2723 3 49180437 49187253 Pvu3g2723 3 49180437 49187253 ECH
Pvu2g1105 2 21585247 21592897 Pvu3g2723 3 49180437 49187253 PCT