Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0204 ATGCTCCGAAACCTTTGGAAACGTTGTTGTCGCCGACGTTGGGGTCCCACGTTTCTCTGTTCCTCGCCCACTTCGCTGTTTCACAGTGCCACCTGCGTGGAGGGAAACCCTGGGTGGAGATGGAGAATCGAAGAAGAACCCTCGCTTCAGATTTCTCATCCTTGGCCCGAATGGGTCCAACTCATCAAGTGCTTGCTCCACAAGGGACACTTTCTTCACGAAGAGGGAAACATGTTTCGCAACACTGCTTTGGACGCCAAAGATTGCAATGCCATTAGAACCGCGTGCCTCAATTTTGGTAGAGACCACTTTCATATTTTAAGATTCCTATCACGAAAAGATATAGGAGTTACTGTGGCACTTGGATGCCCGAGCTTAGATAGGAAAGTGGTCAACTCAGGAAAGCGTCTCAGAGCATATGTGGGTATTGATGAGGGAAATGTATGCAGTTCCTGCAATTTGAGGGGGGACTGTGAAAGGGCTTTCGTTAAGGCGCGCGAAGATGAAGGTGGAAGAACAGTGGATGTTATGCGTATTATGTTGACGTATGGGCTTGACCCGATTACTGGTTCAGTGGATAACAAACCGTGTCTTACTAAAAAGGTAGAAGATTCAGTGAGAAGACTGCTGAAAGAAATAGTAGAGCACAGTACCAAAGAGGAAAATTCTAATTTTCCAGACAGCACAGAGGTTGTCATGGGAAATGTTCATTCCAATCAGCAAGGCAAGGGCAAAATAGATGTTGCAATGATGAAGCAAGGGGACTGGCTTTGCCCCAAATGCAATTTCATGAACTTTGCTAGAAACATCAGGTGCTTGGGCTGTGACAGCCTCTTTGAGGAAAAAATCAAGCAATTGAAGCAGGAAAACAATCACTTACCTTTGAAGAAGGGAGACTGGATATGCAATATATGCAATTTCCTGAATTTTGCAAAGAATACAAAATGTTTGCAATGCAAAGAGAGGCCTTCCAATCGTCACCTTAATCCTGGTGAATGGCAATGTGACTCGTGGGTTCTTCTTAACCATACTGTTATTTTGTTTCAGTTCCTGTGCCAAATGAACAGGTGCAATTACCTCAATTTCAGAAGAAACATGGTTTGCCTGAAATGTGACCATAGACGGCTTATAGTATCAAGGGCTTCAAACTCTTCTCTTCAACCTCAGCAAGAAGATATAAACCACCATAAGATTGGCAAATTTGGTTTTGGTGCGTATCAGGGTGAAAGAAGTGGTGAAACACATATGGGTTTTGAAAGAAAGAAAAGGAACAAAGATTCACATATGTGGAGATTTGTTGAGGACAAGAGTGAAAATCACAAGACCTTAAATAAATCAAATGATCCTATAGATTTTCCTATTGTTGGAGGCAAGACTCACTTGGCTGAGGTACAAAGGAGAGAGGCATATAAGAGTGAGTTGCCAAATGAGTGGAGAAGGCCTCCATGGCAAAGTGAAACTGATGATGAGTTTTGTTCTTCAGATAACCAGGACACTGATGATGAGTTTTGTTCTGCCAATAATCAGAGTGCTGATGATGAAGAAATGGACGAATGGTTCGGAAAAGGCAAGATTGGAAGGTAG 1584 0.4312 MLRNLWKRCCRRRWGPTFLCSSPTSLFHSATCVEGNPGWRWRIEEEPSLQISHPWPEWVQLIKCLLHKGHFLHEEGNMFRNTALDAKDCNAIRTACLNFGRDHFHILRFLSRKDIGVTVALGCPSLDRKVVNSGKRLRAYVGIDEGNVCSSCNLRGDCERAFVKAREDEGGRTVDVMRIMLTYGLDPITGSVDNKPCLTKKVEDSVRRLLKEIVEHSTKEENSNFPDSTEVVMGNVHSNQQGKGKIDVAMMKQGDWLCPKCNFMNFARNIRCLGCDSLFEEKIKQLKQENNHLPLKKGDWICNICNFLNFAKNTKCLQCKERPSNRHLNPGEWQCDSWVLLNHTVILFQFLCQMNRCNYLNFRRNMVCLKCDHRRLIVSRASNSSLQPQQEDINHHKIGKFGFGAYQGERSGETHMGFERKKRNKDSHMWRFVEDKSENHKTLNKSNDPIDFPIVGGKTHLAEVQRREAYKSELPNEWRRPPWQSETDDEFCSSDNQDTDDEFCSANNQSADDEEMDEWFGKGKIGR* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0204 527 Pfam Zn-finger in Ran binding protein and others 296 320 IPR001876 -
Pvu3g0204 527 Pfam Zn-finger in Ran binding protein and others 252 277 IPR001876 -
Pvu3g0204 527 ProSiteProfiles Zinc finger RanBP2 type profile. 252 281 IPR001876 -
Pvu3g0204 527 MobiDBLite consensus disorder prediction 471 527 - -
Pvu3g0204 527 ProSitePatterns Zinc finger RanBP2-type signature. 300 319 IPR001876 -
Pvu3g0204 527 SMART zf_4 331 374 IPR001876 -
Pvu3g0204 527 SMART zf_4 298 322 IPR001876 -
Pvu3g0204 527 SMART zf_4 254 278 IPR001876 -
Pvu3g0204 527 PANTHER ZINC FINGER PROTEIN 273 524 - -
Pvu3g0204 527 PANTHER ZINC FINGER PROTEIN 45 233 - -
Pvu3g0204 527 PANTHER ZINC FINGER PROTEIN 250 276 - -
Pvu3g0204 527 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 250 276 - -
Pvu3g0204 527 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 273 524 - -
Pvu3g0204 527 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 45 233 - -
Pvu3g0204 527 SUPERFAMILY Ran binding protein zinc finger-like 289 322 IPR036443 -
Pvu3g0204 527 ProSitePatterns Zinc finger RanBP2-type signature. 256 275 IPR001876 -
Pvu3g0204 527 SUPERFAMILY Ran binding protein zinc finger-like 250 277 IPR036443 -
Pvu3g0204 527 ProSiteProfiles Zinc finger RanBP2 type profile. 296 325 IPR001876 -
Pvu3g0204 527 Gene3D - 287 323 - -
Pvu3g0204 527 Gene3D - 324 376 - -
Pvu3g0204 527 Gene3D - 247 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0204 Pvu-Chr3 1759545 1763415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0204 44 328 EF-hand Containing Proteins AT1G55040 40.385 5.27e-59 207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0204 3 1759545 1763415 Pvu3g0204 3 1759545 1763415 ECH