Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0196 ATGTCATCACAAACCGCCGCGGCGGAGGCGCCGCTGCTCCGCAACCGCCAAGACGCGGCCCGAGCGCCTGCGCTGGCGCTCCTCCTCGGCCGCGCCGGCCGCCGAGGGCCATCCATGCTGGTGCGGGAGACGGCGGCGCGCGAGCTCGAGGAGCGCCGCGCGGACTGGGGCTACTCCAAGCCGGTGGTGGCGCTCGACATGTCGTGGAACATGGCGTTCGTCGTCGTCTCGGTGGTGATGCTCGCATGCACCACCGGCGAGCGGCCGAACTCGCCGATCCGCGTGTGGATCGTGGGGTACGGCTGCAAGTACCGGCGCCGTAGCCGGAGAGACTCGCGCCGCGGCCAGGGGGCGCGGGACTTGGAGAGCCAAGCCGGAAGTGACAACGATGATGGCGGCAACGACAGCGACAGCGATGACGGTGATGGGAGCTCTGGCAATTCGTCTCGCTCCCGGTTCACAAAACGATGTGAATCATTAAATACTGGAGTTTCATTCCTTTGGTGGATAGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATACTTCTGCAAGATGCCCCACGATTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTCTTTTTCGCCATCTTTTGTGTTGTCTTGGCGTGCTTGATTGGTATTGCTCTTTGTTGTTGTTTACCCTGCATCATTGCTATCCTCTATGCGGTTGCAGGACAGGAAGGTGCGTCAGAAGCAGATCTTAGCATACTTCAAAAATACAGATTTCGAATACCAAGCAATGAGGATAAGTCCAGTGGTGGAGGTGGATCAATGGTTCCCATAGAAACCAGCAGTGCTTACTTGGCAACTGAACGAATACTTTTACCAGAGGATGCGGAATGCTGTATTTGCCTCTGTTCATACGAGGACGGAGCAGAGCTCCATGCTCTTCCTTGCAACCATCACTTTCATTCTTCATGCATAGTGAAATGGCTGAAGATGAATGCCACTTGTCCTCTCTGCAAGTACAATATTCTCAAGGGAAATGAACAAGTGTGA 1029 0.5559 MSSQTAAAEAPLLRNRQDAARAPALALLLGRAGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSVVMLACTTGERPNSPIRVWIVGYGCKYRRRSRRDSRRGQGARDLESQAGSDNDDGGNDSDSDDGDGSSGNSSRSRFTKRCESLNTGVSFLWWIVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILQKYRFRIPSNEDKSSGGGGSMVPIETSSAYLATERILLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0196 342 SMART ring_2 291 331 IPR001841 -
Pvu3g0196 342 PANTHER TARGET OF ERK KINASE MPK-1 5 342 - -
Pvu3g0196 342 SUPERFAMILY RING/U-box 278 336 - -
Pvu3g0196 342 Pfam Ring finger domain 290 332 IPR001841 -
Pvu3g0196 342 MobiDBLite consensus disorder prediction 109 152 - -
Pvu3g0196 342 ProSiteProfiles Zinc finger RING-type profile. 291 332 IPR001841 -
Pvu3g0196 342 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 342 - -
Pvu3g0196 342 CDD RING-H2_PA-TM-RING 290 332 - -
Pvu3g0196 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 337 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0196 Pvu-Chr3 1691540 1698997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0196 8 341 C3H Transcription Factor Family AT1G68070 65.994 4.20e-162 454
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0196 3 1691540 1698997 Pvu3g0196 3 1691540 1698997 ECH