Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0173 ACCACATGCACTGAGGCTACTGTGGCTTTGAATCTTCTGCGGGAAAGGAAAGGTTGTTTTGATGTGGTACTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAGCTCCTTGAACATGTTGGGCTGGAAATGGACCTTCCTGTAATCATGATGTCTGGTGATAGTACAACAAGTGCTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAACTGAGGAATATATGGCAGCATGTTGTTAGGAAAATCTGGAATGAAAATAAAGAACATGATAATTCTGGCAGCATGGAAGACAGTGATTGGAATAAACGGGGGAATGATGATACTGAATATACTTCTTCTGTTGCTGATGCAGCAGAAGTAGTTAAAGGCCCAAAAAAGAGGAGCAGTTTAAAAGAAGAAGATATTGAATTGGAGAGTGATGATCCAGCTACATCTAAGAAGCCTCGTGTAGTGTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTTGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACTAGAGAAAATGTTGCAAGTCATTTACAGAAATTTAGACTTTATTTGAAGCGATTAAGTGGAGTGGCACAGCAACAAAATGGGATGTTAAATGCAGTTCCTGGGACTATAGAATCCAAGCTGAGTGCTACTGGAAGATTTGACATACAAGCTTTGGCTGCTGCTGGCCATGTTCCGCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCTTAGGTTGCCCTGCATCTAACATAATGTCTACAATGGACCAGGCTACCTTGCTGCAAGCATCCATTGGGCTAAAACATTCCCATGCTGAACATGCTGTGGCGTATGGTCAGCCTCTTGTTAAGCGTCCCAACATTGGCACGGATTTTCTTCCATCTGTCTTAACTGCGAATGATGTGTCGTCAGGATATGGTGCATGGCCATCATCTAATAATACAATGGGTTCAGTGAGACCCAATAATAGCGTTGAAAGAGTGGGTACTCAGAATAACAACATACTGATGGATATATTAGACCACCAGCAAAGGCAGCTACCCCAGCAAAAACAACAGCACCACCACCAGCAAAAGCAACAGCAACAGCTGCGGCAGCAGCCTCTGATACCTGATCAAAGTTGTTCAATCAATGTTCAACCATCTTGCTTGGTGGTTCCATCTCAATCCTCTGACACTCTACAGGCAGTAAATAGTTCTGCTTCTGTTGATCAGAATTGCAGTTTTGGCAGGAATGCCATTATTGATTATAGTTTATATTCACAGAAATCAAATAATTCAGTTAGTGCATCTCAATTTCCCAGTAGTGACACAAAAGCTCAAGGTGTTCTGTATGGGTATACTACCCCCTCCACTTGTTCTATGAGCTCCATCAATGGCAATATTCAGCAGCTTCAAAACTCAACTTTGACATTTGGTGCTGCAAGACCTTTGCCTAGCCCTTTGCCCATGTCTGATAGACAAGATCCCTATGGTTTCAAATCGGGTGATTCATTCGATCAAGTATGCCTTAGGAATATTGGGTTTATTGGCAAAGGTATCTGCATTCCAAATAGGTTTGTGCAAAATGAAATTGAATCATCTGTAAGTGATTTTAGTAAAATGAAAGTCAATGTAGATAGCAGTGGCAACACACTGAAGGAGGAGCCAAATTTTATAAACATGCAAAAAGTGAGTCGCCCAATCGTAGAAAGATATCAATCTTGTGATCATTCAAGTGTGTTTACTGAATAG 1806 0.4175 TTCTEATVALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKIWNENKEHDNSGSMEDSDWNKRGNDDTEYTSSVADAAEVVKGPKKRSSLKEEDIELESDDPATSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNAVPGTIESKLSATGRFDIQALAAAGHVPPETLAALHAELLGCPASNIMSTMDQATLLQASIGLKHSHAEHAVAYGQPLVKRPNIGTDFLPSVLTANDVSSGYGAWPSSNNTMGSVRPNNSVERVGTQNNNILMDILDHQQRQLPQQKQQHHHQQKQQQQLRQQPLIPDQSCSINVQPSCLVVPSQSSDTLQAVNSSASVDQNCSFGRNAIIDYSLYSQKSNNSVSASQFPSSDTKAQGVLYGYTTPSTCSMSSINGNIQQLQNSTLTFGAARPLPSPLPMSDRQDPYGFKSGDSFDQVCLRNIGFIGKGICIPNRFVQNEIESSVSDFSKMKVNVDSSGNTLKEEPNFINMQKVSRPIVERYQSCDHSSVFTE* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0173 601 MobiDBLite consensus disorder prediction 369 392 - -
Pvu3g0173 601 MobiDBLite consensus disorder prediction 99 154 - -
Pvu3g0173 601 MobiDBLite consensus disorder prediction 131 154 - -
Pvu3g0173 601 MobiDBLite consensus disorder prediction 99 117 - -
Pvu3g0173 601 ProSiteProfiles Response regulatory domain profile. 1 90 IPR001789 GO:0000160
Pvu3g0173 601 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 423 IPR045279 GO:0009736
Pvu3g0173 601 Gene3D - 154 217 - -
Pvu3g0173 601 MobiDBLite consensus disorder prediction 331 350 - -
Pvu3g0173 601 Pfam Myb-like DNA-binding domain 160 208 IPR001005 -
Pvu3g0173 601 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 158 211 IPR006447 GO:0003677
Pvu3g0173 601 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 1 423 - -
Pvu3g0173 601 SUPERFAMILY CheY-like 2 97 IPR011006 -
Pvu3g0173 601 SUPERFAMILY Homeodomain-like 155 215 IPR009057 -
Pvu3g0173 601 Gene3D - 1 108 - -
Pvu3g0173 601 SMART REC_2 1 86 IPR001789 GO:0000160
Pvu3g0173 601 PIRSF RR_ARR_type-B 1 594 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pvu3g0173 601 Pfam Response regulator receiver domain 3 85 IPR001789 GO:0000160
Pvu3g0173 601 CDD REC_typeB_ARR-like 1 90 - -
Pvu3g0173 601 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 214 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0173 Pvu-Chr3 1541644 1544330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0173 8 272 Response Regulator Gene Family AT3G16857 56.338 4.98e-91 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pvu3g0173 Response_reg 1.4e-15 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0173 3 1541644 1544330 Pvu3g0173 3 1541644 1544330 ECH