LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu3g0169	ATGGGGTGGAAGAGAGAACGGGTTTTGAAGAGGAAAAGGAAAGGTCAGGCAAAAGAGTTAGCAATTAGGATGGGTAAAACAATTGAGTTGTATGGATTTCCTACATCTGTGACAGCGCATGATGTAAAGATTTTTGTAGAGAATTACACTGGTAAAGGAACTATTGCGATGATGAAGATAAGGCATGGCAAAGGTCGGATTCCAAGAGCATTTGCTATTATTCAATTCACCACAGAAGAGTATGCTGCATCTATGATGTCGATAGCTAATAACTTTTTGAGAACACTGCGGTATGGAACCGCCTTCTTAAAAGCTCGGGTACTGGAAAAAGATATTGATTCAAAGATAGGAATGAATTTGCCTAGTTTAGAAGGTGTAAAAGTGTATTTTGGCTGCCCGATTTCGAAAGAAGTATTTTCTGTTCTGGAGGAAATGAAGGATGTCAGTCTAACTTTTGGGAGTGGAAAGAGAAAGGTGCAGTTGATGTTTTCGCATAACCTTGTGCAATATAGACTTGAGCTTTCATATGAGAACATTTGGAAGGTTGAGCTGATTCGACCACGGAATAGAACTGCATGTTATCTCCTTGTTCAGTTACTTGGTGCTCCCCGGATATTTGAAAACGGCGTACAAACGTATTCGGAAGATGTATTTGTCAGTATATTTGATAATCCATTGTACAACTTCTTCAAAGATGTCCCTGAAGACCAATGGACCAGAACAATTGATTTCACTAAGGATAGTTGTATTGGACAGTCCTCCGCCATATGTTTGGAGTTTTCCAGGGAACAAAATTTACCAAATTTCAAGAATATTTTTGCTTATTATGAGCAAAGTGAGAGGCAATACACACTACAGATAGGAATACCCTTTTCTCAAAATTGGAATCTTGTCCCCATTGTTGCTCCTCAAGGTGTTGAAATACCATACGACATACTGTTCAAAGTCAATTCATTGGTTCAGCATGCATGTCTTCCAGGACCTGCACTCAATGCTGACTTCTATCGCTTGGTTGATCCACGCAGAATGCCACTTGATTTTATTGAAAATGCTTTGGAAAAGTTGTACTATTCAAAGGAATTCTGTTATGAACCTGCAAAGTGGCTCACTAATCAGTACAACAAGTACCTTAAATCAAAGCATCATCCACGGTCACCTACAATATCTTTGGATGCAGGGTTGGTATATGTTCGCAGGGTTCAGATCACACCTTGCAAAGTTTACTTTTGTGGCCCAGAGGTTAATGTCTCAAATCGTGTTCTCCGACATTTCCATGAACATTTGGATAACTTCATACGTGTTTCATTTGTCGATGAGGAGTTGGATAAGATGTTTTCAACTGATTTGTCATCACGTGCACAGAAGAAAACTGAGGTATACAAAAGAATTCTTGACATCCTTAAAAATGGCATTCTTATTGGAGATAAGAAGTTTGAATTTCTAGCATTCTCATCAAGTCAGTTGCGGGAAAACTCTCTCTGGATGTTTGCTCCTACAGGAACTGGATGCAGTGCCGCTTTCATAAGGGAATGGATGGGAAATTTCAGCAGGATTAGGAATGTTGCAAAATATGCTGCTAGGCTGGGGCAATCTTTTGGTTCATCAACTGAAACTTTAAGCGTCCGTAGGGATGAAATTGAAATTATTCATGATGTGAAGAGGACTTGTGGTGGAATTGAATATGTCTTCTCTGATGGTATTGGGAAAATATCTCTTGAATTTGCCAAGAGAGTGGCTAAAAAATGTGGCTATGATTGCACTCCATCTGCCTTTCAGATTCGTTATGGTGGTTACAAAGGAGTTGTAGCTGTTGATCCAGAATCACCTTATAAGCTATCACTGAGGAATAGCATGCGGAAGTACGACTCAGATAACACAAAGTTAGATGTTTTGGGTCGTAGTAAGTTTCAGCCATGTTTTCTGAATAGGCAGTTAATTACTCTCTTATCCACTCTTGGTATCAAAGATGGTGTTTTTGAGAAAAAGCAAAGAGAAGCTGTGGATCAACTGAACACTATACTGACAGATTCATTGAAGGCACAGGAAGTTCTGGACTTAATGTCTACTGGGGAGATCACCAATGTTCTGAAGGAGATGCTCATTTGTGGCTACAAGCCTAATGAGGAACCATTCCTTTCAATGATGCTGCAAGTATTCAGGGCATCAAAACTGTTGGAACTGCGACTCAAATCCAGGATCTTTATTCCGAAGGGAAGAGCAATGATGGGGTGTCTAGATGAAACTAGTACTCTGGAATATGGTCAAGTATTTGTGCAGTTTTCCAACAATAGGCTGAGGGATCTGTCTGATGATGATTCTTGTTCCTATGATTTGCCAAAAACTTATATGGTTGTAGGTAAGGTGGTAGTAGCTAAAAACCCTTGCTTGCACCCTGGTGATGTGCGTGTTTTACAAGCTGTGGATGTGCCAGATTTGTACCACATGGTGGACTGTGTTGTTTTCCCTCAAAAAGGAACAAGACCTCATCCAAATGAATGTTCTGGAAGTGATCTGGATGGAGATATCTACTTTGTTTGTTGGGACCCTGAATTGGTTCCTTCTGGCGAAGTCCAACCAATGGACTACACTCCCTCCTCCACTATAGAACTGGATCATGATGTCACAATTGAGGAGGTTGAGGAGTATTTTTGCAACTACATTGTGAATGACAGTCTAGGAATAATTGCCAATGCACACACTGTCTTTGCAGACAACCAACCAGGAAAAGCCATGTCTGCTCAATGTCTTCAGCTTGCAAAGCTGTTTTCAACAGCAGTTGACTTTCCAAAAACTGGTGTTCCAGCAGTTATCCCTAGGGAACTGTATGCCAAAGAGTATCCTGATTTCATGGAGAAGTCTGACAAAGTCACCTACAAATCTCCCAATGTGATAGGAAAGCTCTTCAGGGAAGTTAAAGAAATAAGTGCTGATGACTCTATTTCATCCTTCACCCAGGAGGTAGCCAGAAGGTCCTATGACACTGAAATGGAAGTTGATGGCTTTATGGATTATGTTGATGATGCTATCTACTACAAAACCAACTATGACTACAAGTTGGGAAATTTGATGGACTACTATGGGATCAAAACTGAAGGGGAAATCCTGAGTGGTAACATAACAAAAATGTCAAAATCCTTCAACAAAAGGAGGGATGCAGAAGCAGTGAATGTGGCTGTGAGGTCCCTAAGGAAAGAAGCTAGGTCCTGGTTCAATGAGGGAAGCAGTGATGATGATGCATATGCAAAAGCTTCTGCATGGTACCATGTTACTTATCATCCAAGTTTCTGGGGTTCCTACAACGATGAAGGGATGAATAGGGATCATTATCTGAGTTTCCCATGGTGTGTTTACCCTCAGCTTCTCCAAATCAAGAAGGAGAAAATGTCCATGAGAAACTACTCTTCTGCATACAGATTGAGTGGCTTGCATTTGAATTGA	3438	0.4055	MGWKRERVLKRKRKGQAKELAIRMGKTIELYGFPTSVTAHDVKIFVENYTGKGTIAMMKIRHGKGRIPRAFAIIQFTTEEYAASMMSIANNFLRTLRYGTAFLKARVLEKDIDSKIGMNLPSLEGVKVYFGCPISKEVFSVLEEMKDVSLTFGSGKRKVQLMFSHNLVQYRLELSYENIWKVELIRPRNRTACYLLVQLLGAPRIFENGVQTYSEDVFVSIFDNPLYNFFKDVPEDQWTRTIDFTKDSCIGQSSAICLEFSREQNLPNFKNIFAYYEQSERQYTLQIGIPFSQNWNLVPIVAPQGVEIPYDILFKVNSLVQHACLPGPALNADFYRLVDPRRMPLDFIENALEKLYYSKEFCYEPAKWLTNQYNKYLKSKHHPRSPTISLDAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFHEHLDNFIRVSFVDEELDKMFSTDLSSRAQKKTEVYKRILDILKNGILIGDKKFEFLAFSSSQLRENSLWMFAPTGTGCSAAFIREWMGNFSRIRNVAKYAARLGQSFGSSTETLSVRRDEIEIIHDVKRTCGGIEYVFSDGIGKISLEFAKRVAKKCGYDCTPSAFQIRYGGYKGVVAVDPESPYKLSLRNSMRKYDSDNTKLDVLGRSKFQPCFLNRQLITLLSTLGIKDGVFEKKQREAVDQLNTILTDSLKAQEVLDLMSTGEITNVLKEMLICGYKPNEEPFLSMMLQVFRASKLLELRLKSRIFIPKGRAMMGCLDETSTLEYGQVFVQFSNNRLRDLSDDDSCSYDLPKTYMVVGKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGTRPHPNECSGSDLDGDIYFVCWDPELVPSGEVQPMDYTPSSTIELDHDVTIEEVEEYFCNYIVNDSLGIIANAHTVFADNQPGKAMSAQCLQLAKLFSTAVDFPKTGVPAVIPRELYAKEYPDFMEKSDKVTYKSPNVIGKLFREVKEISADDSISSFTQEVARRSYDTEMEVDGFMDYVDDAIYYKTNYDYKLGNLMDYYGIKTEGEILSGNITKMSKSFNKRRDAEAVNVAVRSLRKEARSWFNEGSSDDDAYAKASAWYHVTYHPSFWGSYNDEGMNRDHYLSFPWCVYPQLLQIKKEKMSMRNYSSAYRLSGLHLN*	1146

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu3g0169	1145	Coils	Coil	1144	1145	-	-
	Pvu3g0169	1145	SUPERFAMILY	RNA-binding domain, RBD	21	92	IPR035979	GO:0003676
	Pvu3g0169	1145	CDD	RRM_SF	28	97	-	-
	Pvu3g0169	1145	Pfam	RNA dependent RNA polymerase	402	971	IPR007855	GO:0003968
	Pvu3g0169	1145	PANTHER	RNA-DEPENDENT RNA POLYMERASE	25	1130	-	-
	Pvu3g0169	1145	PANTHER	RNA-DEPENDENT RNA POLYMERASE	25	1130	IPR007855	GO:0003968

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu3g0169	Pvu-Chr3	1501098	1508313	Proximal

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu3g0169	3	1501098	1508313	Pvu3g0169	3	1501098	1508313	ECH