Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0147 ATGGGAGGGGGTCACATGGGGTGGTTCCTCTTATGTTCTTCTTCTCTGCTTTTTCTTGCTGTGATTGCTTCATCTGGGTCACTCGCAAACTTGCCCATCATAGCCTTTGAGGATGGCTACACCCACTTGTTTGGGGACCATAATTTGGTCATCCATAGAGATGGAAAATCAGTTCACCTTTCGCTTGATGAAAGAACAGGTTCTGGATTTGTGTCTCATGACCTTTACCTTCATGGCTACTTCAGTGCCTCGATCAAGTTGCCTTCTGATTACACAGCTGGAGTTGTGGTTGCATTTTATCTGTCAAATGGTGACATGTTCCAGAAGAACCATGATGAGATAGACTTTGAGTTTTTGGGGAACATTAGAGGCAAAGACTGGAGGATTCAGACCAATGTTTATGGCAATGGAAGTACCAACACTGGTAGAGAGGAAAGATGTGGCCTATGGTTTGATCCTGCTGAGGATTTCCATCAGTACAGTATTCTCTGGACTGATTCTAAGATCATATTTTTAGTGGATGATGTTCCTATTAGGGAAGTTAAGAGAACAGAATCTATGGGAGGAGATTTCCCCTCAAAGCCAATGACTTTGTATGCCACCATATGGGATGCATCTGATTGGGCCACCAATGGAGGCAAATATAGAGTAAATTACAAGTATGCACCCTTTGTTGCTGAGTTCTCAGACCTTGTCCTGCATGGTTGTGCAGTTGATCCCATTGAGCATGTGACCAAGTGTGACAGTAGTGCCCAAGATTCTGAGGCAGTTCCTTCTGGCATTACTCCCGTACAAAGAACCAAAATGGGTAACTTCAGGTTGAAGCACATGACATACTCTTACTGTTATGACACAGTTAGATACAAAGTCCCTCCACCAGAGTGTGTCATCAAACCCCAAGAAGCTGAAAGGCTTAGAAAATTTGATCCCGTCACGTTTGGCAATGGCCGGCGCCACCGTGGAAAACGACACCACCGTAGTAGAGGTAGCCAGGAAGAGACTACCTCTTCATTTTAA 1017 0.4454 MGGGHMGWFLLCSSSLLFLAVIASSGSLANLPIIAFEDGYTHLFGDHNLVIHRDGKSVHLSLDERTGSGFVSHDLYLHGYFSASIKLPSDYTAGVVVAFYLSNGDMFQKNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTNTGREERCGLWFDPAEDFHQYSILWTDSKIIFLVDDVPIREVKRTESMGGDFPSKPMTLYATIWDASDWATNGGKYRVNYKYAPFVAEFSDLVLHGCAVDPIEHVTKCDSSAQDSEAVPSGITPVQRTKMGNFRLKHMTYSYCYDTVRYKVPPPECVIKPQEAERLRKFDPVTFGNGRRHRGKRHHRSRGSQEETTSSF* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0147 338 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 26 228 IPR000757 GO:0004553|GO:0005975
Pvu3g0147 338 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 14 316 - -
Pvu3g0147 338 MobiDBLite consensus disorder prediction 307 338 - -
Pvu3g0147 338 Gene3D - 24 295 - -
Pvu3g0147 338 CDD GH16_XET 34 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pvu3g0147 338 Pfam Glycosyl hydrolases family 16 40 220 IPR000757 GO:0004553|GO:0005975
Pvu3g0147 338 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 298 IPR013320 -
Pvu3g0147 338 PIRSF EndGlu_transf 4 300 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pvu3g0147 338 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 14 316 IPR044791 GO:0004553
Pvu3g0147 338 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 259 295 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0147 Pvu-Chr3 1319859 1322713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0147 13 337 Glycoside Hydrolase AT2G01850 67.781 7.21e-167 466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0147 3 1319859 1322713 Pvu3g0147 3 1319859 1322713 ECH