Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3311 ATGGCTATGGCAAAAGAGAAAGCGGAAGATGAAGAGAAGGTTCAGACCTGTGGGAAGAGGTTGAAATGCACGAGGAATGATGAAGATGATGATGGTGTTGAAGCTGTTGAGGAGGAAGATAGTGAGCTTCTTCTGAAGCCAGGGATTTTCTTCTATCCGACAACCCCAACATCCTTTGTTGTCTCTGATGCTCTTGAACCCGATTTTCCCGTCATATATGTCAACAAGATTTTTGAAATCTCCACTGGGTATCGTGCTGACGAGGCCCTCGGTCGCAACTGTCGGTTCTTACAGTATAGAGATCCTCGAGCTCAGAGGCGACACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATCAGAAGATGTCTTGAGGAAGGTGTGGAGTTCCAAGGTGAACTTCTGAATTTCAGAAAGGATGGCACACCTTTGGTGAACAGATTAAGACTTGCACCAATTCATGACGATGATGGGACCGTGACACACGTAATAGGTATCCAACTCTTTTCTGAGGCAAATATAGATCTGAACCGAGTCTCATATCCAGTGTTCAAAGAGACTTGCAATCAAGAGTTTGACAAGAATGGTGAATATTCTCCAAAGAGTGGACAGTGTTTGTACAGCCAGCAGCAAGAGATGTGCGGCATTCTGCAGCTTTCCGACGAAGTATTGGCTCACAACATTTTGTCACGCTTGACACCAAGAGATGTTGCATCCATTGGGTCTGTATGTAGGAGAATACGTCAATTAACGAAGAATGAGCATGTCAGGAAGATGGTATGTCAAAATGCGTGGGGCAAAGAAGTGACCGGCACATTGGAGCTGATGACCAAGAAGCTAGGATGGGGTCGTCTGACTCGCGAACTCACCACCCTTGAGGCTGTTTGTTGGAGAAAAATGACAGTTGGAGGCGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAACCGGCTGGTGTTGTTTGGAGGTGAAGGAGTGGACATGCAGCCTATGGATGACACTTTTGTTCTAAATCTCGATGCGAAAAATCCAGAATGGCGCCGGGTTATTGTGAAATCATCCCCACCAGGAAGGTGGGGCCACACACTCTCGTGCTTAAACGGTTCTTGGTTGGTGATTTTTGGTGGCTGTGGGAGGCAAGGACTGCTCAATGATGTCTTTGTGCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAAGTATGTGGTGGAACACCACCACTTCCTAGATCATGGCATAGTTCTTGCACAATTGAAGGGTCAAAATTGGTGGTCTCAGGTGGGTGCACAGATGCAGGTGTACTTCTCAGTGACACGTATTTGCTGGATCTGACAATAGATAATCCAACATGGAGAGAAATTCCAACATCATGGGCTCCACCATCTCGGTTGGGGCACTCACTCTCAGTCTATGGGAGGACAAAGCTTCTGATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGGCTAAGATCAGGTGAGGCTTACACAATTGACTTAGAAGATGAAGAACCACAGTGGAGGCAACTAGAGTATAGTGCATTCACAGGATTAGCAAGTCAAAGTGGTGTTGTTCCTCCTCCTAGGCTGGACCATGTTGCTGTGAGCATGCCTTGTGGGAGGATCATTATATTTGGAGGTTCCATTGCTGGTCTTCACTCACCATCTCAGCTCTTTCTCTTGGACCCTTCTGAGGAGAAACCATCTTGGAGGATCCTCAATGTTCCAGGGCAACCACCTAAGTTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTGCTGGTGTTGGGAGGACACACTGGAGAGGAATGGATACTGAATGAGTTGCATGAGTTGTGCCTGGCAAGTCTGTGA 1872 0.476 MAMAKEKAEDEEKVQTCGKRLKCTRNDEDDDGVEAVEEEDSELLLKPGIFFYPTTPTSFVVSDALEPDFPVIYVNKIFEISTGYRADEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKETCNQEFDKNGEYSPKSGQCLYSQQQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKMTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVIVKSSPPGRWGHTLSCLNGSWLVIFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDNPTWREIPTSWAPPSRLGHSLSVYGRTKLLMFGGLAKSGHLRLRSGEAYTIDLEDEEPQWRQLEYSAFTGLASQSGVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASL* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3311 623 Pfam PAS domain 65 165 IPR000014 -
Pvu2g3311 623 Gene3D - 289 509 IPR015915 GO:0005515
Pvu2g3311 623 Pfam F-box domain 215 252 IPR001810 GO:0005515
Pvu2g3311 623 SMART pac_2 130 171 IPR001610 -
Pvu2g3311 623 SUPERFAMILY Kelch motif 516 616 IPR015915 GO:0005515
Pvu2g3311 623 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 11 622 - -
Pvu2g3311 623 Pfam Galactose oxidase, central domain 423 474 - -
Pvu2g3311 623 Pfam Galactose oxidase, central domain 374 421 - -
Pvu2g3311 623 CDD PAS 55 165 IPR000014 -
Pvu2g3311 623 PANTHER ADAGIO PROTEIN 3 11 622 - -
Pvu2g3311 623 Gene3D PAS domain 52 177 - -
Pvu2g3311 623 Pfam Galactose oxidase, central domain 309 359 - -
Pvu2g3311 623 Pfam Kelch motif 533 580 IPR011498 GO:0005515
Pvu2g3311 623 SUPERFAMILY Kelch motif 296 513 IPR015915 GO:0005515
Pvu2g3311 623 Gene3D - 208 259 - -
Pvu2g3311 623 SUPERFAMILY PYP-like sensor domain (PAS domain) 66 166 IPR035965 -
Pvu2g3311 623 Gene3D - 510 623 IPR015915 GO:0005515
Pvu2g3311 623 SUPERFAMILY F-box domain 210 265 IPR036047 GO:0005515
Pvu2g3311 623 TIGRFAM sensory_box: PAS domain S-box protein 71 165 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3311 Pvu-Chr2 48099856 48103549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3311 58 179 AGC Kinase Gene Family AT5G58140 34.677 2.38e-14 74.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3311 2 48099856 48103549 Pvu2g3311 2 48099856 48103549 ECH