Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3300 ATGTGTTCGCTGACCCACTTGCGTCCGCTATCATGCGCCGCATCTGCAGCGGCGTCACGGTTAGTGCCCTACCCACCGGACCTCGTAAAGTGGGTAACCAGAGAGGGTGGGTTCGTGCACCGCGCGCTGGAGATAGCACAACTCGGTTCATCCAACGGACTCGGCATAGTGGCCAAGGAACAAATTCCACGTGGCACTGACCTAATTGTCCTTCCCCACCACCTTCCCCTGCGCTTCACCACTCTTGAACACGACCCTCTGCTGCATCACTTGGCGCGTCAAATCCCTGAGGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTGCAAGAGAGGGCAAAAGTTGGGTCCTTCTGGTGGCCCTACATAAGTAATCTCCCTGAAACATACACCGTGCCTATTTTCTTTCCTGGGGAGGACATAAAGAACTTGCACTATGCTCCTCTTCTTCATCAGGTAAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCGTGCCTTAGTAAGTGTTAAGCCAGATAGCCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCGTCTAGAGCATTCAGGTTGTATGGTGAAAAGGATCAGAATGGGGACCGCGTTCACTTACCCATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGCAAGAAGATACCAGTAGCATGAAGATGCAAGTGAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTCTGTTACTTTGCTATGGCTGTTTAAACAATGATTTTTTCCTTCTAGATTATGGATTTGTGATGCACTCAAACCCTTATGACTGTATTGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCACAGCAGCTGGAGTTTCTTCACCAAATTTCTCAGCACCTGCTCCGTGGCAGCAACTGATTTTATCTCAGTTGAATCTATTTGGAGAAACTCCAGATCTGAAGGTGAGCTTAGGTGGTCAAGAAACAGTAGAGGGCCGCTTGGTGGCTGCATTGCGAATAGTCCTTTCAAGTAATATGGAAACTGTGCAGAAGTATGACCTCAGTACACTCCAGTCTTTAGATGTTGAAGCTCCTCTTGGTGTTGCAAACGACATAGCTGTATTTCGCACCCTAATTGCTCTGTGCGTCATTGCACTGGAACACTTTCCGACCAAAATAATGGATGATGAATCACTGTTGAAACAGGGTGCTTCAGGTTCAACCGAGTTAGCCATTCAGTACAGAATCCAAAAGAAATGCGTGATTATAGACGTAATGAAAAATCTCTCAAGGAGGGTAAAGCTTCTATCATCAAAGGAAACAGCAACCGCTGAAGGCTAA 1398 0.4628 MCSLTHLRPLSCAASAAASRLVPYPPDLVKWVTREGGFVHRALEIAQLGSSNGLGIVAKEQIPRGTDLIVLPHHLPLRFTTLEHDPLLHHLARQIPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLHYAPLLHQVNKRCRFLLDFEQEVKRALVSVKPDSHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDQNGDRVHLPMMLPLIDMCNHSFNPNARIVQQEDTSSMKMQVKVVAETAIKEDDPLLLCYGCLNNDFFLLDYGFVMHSNPYDCIELKYDGALLDAASTAAGVSSPNFSAPAPWQQLILSQLNLFGETPDLKVSLGGQETVEGRLVAALRIVLSSNMETVQKYDLSTLQSLDVEAPLGVANDIAVFRTLIALCVIALEHFPTKIMDDESLLKQGASGSTELAIQYRIQKKCVIIDVMKNLSRRVKLLSSKETATAEG* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3300 465 Pfam Rubisco LSMT substrate-binding 319 440 IPR015353 -
Pvu2g3300 465 Gene3D set domain protein methyltransferase, domain 1 8 283 - -
Pvu2g3300 465 Pfam SET domain 53 270 IPR001214 GO:0005515
Pvu2g3300 465 SUPERFAMILY SET domain 26 288 IPR046341 -
Pvu2g3300 465 ProSiteProfiles SET domain profile. 41 270 IPR001214 GO:0005515
Pvu2g3300 465 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 3 462 - -
Pvu2g3300 465 Gene3D - 323 460 IPR036464 -
Pvu2g3300 465 PANTHER F21J9.27 3 462 - -
Pvu2g3300 465 CDD SET_LSMT 42 284 - -
Pvu2g3300 465 SMART set_7 41 276 IPR001214 GO:0005515
Pvu2g3300 465 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 280 459 IPR036464 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu2g3300 SET 3.4e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3300 2 48030317 48033276 Pvu2g3300 2 48030317 48033276 ECH