Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3289 ATGGAGAGAGATTTCATGGGCCTGAACTCCAAAGAACCACGAACTGTGGTGAAGGAGGAGATCAACGATGATAGCTACGAAGACTCTGGCTTCAGAAAGGGTTCCATTGCACAGTGGCCTTTCTCGAACAAAGTATCTGCCCTTCCACATTTGATGCCTTTCAAGGCTTCTCAAGATGATAAGACTAAGAAGATAGTGTCTGGTCCCATAACAGCTGGCCTTTTATCTATCTTTAGTCAAGATGCACTTGAGTCTACTCAGAAATGCTCTGCTGGTGAACCCCAGAAATCTTTCAATCATGATGGGCAAGGTGGTCATCATTTTTCGATGACTCCATTTTCTGTACAACATGATATGAATTCTGTGAATCGTCCTCTTGATGTGAAGATGTTTTCAGTTCCCAATCAAGCAATTTCAGCTTCCTTGGGGAGTCCATTCCTGAAGGATCATTTTTCAACTGCTGGTCATAATTTGAATGGCACTAGTGTGAAGCAACCACTTGGGGGAATACCTGTTTCTGTGCCTCATTTAGTTATTCCCAACGCTGGTGCTGTTGCTGGAATGATTGAATCATGTGTGAAACCATCTCCGCCTTCTGCCCAACTTACCATCTTCTATGCGGGAACTGTCAAAGTCTTTAATGATATCTCTGCTGAAAAGGCTCAAGCTATCATGTTGTTGGCTGGCAATAGCTTATCAATAGCTCCGAACATGGGCCAGCCAAAAGTTCACGTGCCTGTCTCGAAGTTGGCTGCTGGCGATGGTATGCCTGCTACTCAACCTGGAAGTACACCACCCGGCTCAGGCCTTTCAAGCCCTATATCTGTTTCTTCACATACTGCGGCACAATCAGGGAGTGGCTCAACCAGCACTGATGAATTTCTGGCTGCTAAAACAACTGGAGTTCCCACCACTCCTATTTGCATTGTGGAGCCTCCAAAGGTAGTCTGCGCAACCGCCATGTTGACATCAGCTGTACCTCAGGCTCGGAAAGCATCTTTGGCTAGATTTTTAGAAAAGCGCAAAGAAAGGGTGATGAGTGCAGCACCATATACCCTCAACAAGAAGTCTGAAGATTGA 1080 0.4565 MERDFMGLNSKEPRTVVKEEINDDSYEDSGFRKGSIAQWPFSNKVSALPHLMPFKASQDDKTKKIVSGPITAGLLSIFSQDALESTQKCSAGEPQKSFNHDGQGGHHFSMTPFSVQHDMNSVNRPLDVKMFSVPNQAISASLGSPFLKDHFSTAGHNLNGTSVKQPLGGIPVSVPHLVIPNAGAVAGMIESCVKPSPPSAQLTIFYAGTVKVFNDISAEKAQAIMLLAGNSLSIAPNMGQPKVHVPVSKLAAGDGMPATQPGSTPPGSGLSSPISVSSHTAAQSGSGSTSTDEFLAAKTTGVPTTPICIVEPPKVVCATAMLTSAVPQARKASLARFLEKRKERVMSAAPYTLNKKSED* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3289 359 MobiDBLite consensus disorder prediction 252 292 - -
Pvu2g3289 359 MobiDBLite consensus disorder prediction 261 292 - -
Pvu2g3289 359 SMART tify_2 195 230 IPR010399 -
Pvu2g3289 359 ProSiteProfiles Tify domain profile. 195 230 IPR010399 -
Pvu2g3289 359 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 358 IPR040390 -
Pvu2g3289 359 Pfam Jas motif 327 351 IPR018467 -
Pvu2g3289 359 PANTHER PROTEIN TIFY 7 13 358 - -
Pvu2g3289 359 Pfam tify domain 196 229 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3289 Pvu-Chr2 47947734 47951495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3289 38 357 Tify Gene Family AT3G17860 36.254 3.77e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pvu2g3289 tify 1.8e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3289 2 47947734 47951495 Pvu2g3289 2 47947734 47951495 ECH