Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2373 ATGGAGACCAAAAGAAGACCCTATGTGGTCCTTACCAATTTCTCTCATATCCTATTTACCCTTCTGGTTTTTACTATTTATATCAAATATTTATGGTCAAGTCTTCCATATGTAACTCCTGAGTCTTTTTTTCTCACAACCTTCTTCTGGATCTCTGAGGAATTTATGGACGCAAGCAGGTCTGAGGGAAAGAGGGTCTTGAGGTACAACGAGGAGGAGGAGGAGGATGAAGAAGAAGAAGAAGAGGAAGAGGTTGAGACGGGTTTTGGAGAAGAAGGAAGGAGGAATAAGAGAGTAATGACAGATCTCTATGGAAAGAAAGGGTCCAAAGCTGGAGGCTCAATGCCACCTTCTTGTCAGGTAGATAACTGTGATGCTGATCTAAGTGAAGCTAAGCAGTATCACAGAAGGCACAAGGTTTGCGAGTACCATGCCAAGGTTCATTCCGTACTCATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGGTTAATCTTTGCTGTGACCTGCCTGAGGGAAAAAGATTCCATGAGCTGTCTGAATTTGATGAATCAAAAAGGAGTTGTAGAACACGATTGGTTGGCCATAATGAGAGGCGTCGCAAAAATGCAGTTGATTGTCGTGGAGAATAATTTCTTCTATGTAACCATGAACATTAATAAACCTTGA 675 0.4222 METKRRPYVVLTNFSHILFTLLVFTIYIKYLWSSLPYVTPESFFLTTFFWISEEFMDASRSEGKRVLRYNEEEEEDEEEEEEEEVETGFGEEGRRNKRVMTDLYGKKGSKAGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKVHSVLMAGLQQRFCQQCSRLIFAVTCLREKDSMSCLNLMNQKGVVEHDWLAIMRGVAKMQLIVVENNFFYVTMNINKP* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2373 224 Coils Coil 64 86 - -
Pvu2g2373 224 MobiDBLite consensus disorder prediction 72 87 - -
Pvu2g2373 224 MobiDBLite consensus disorder prediction 69 92 - -
Pvu2g2373 224 SUPERFAMILY SBT domain 117 169 IPR036893 GO:0003677|GO:0005634
Pvu2g2373 224 Gene3D - 115 169 IPR036893 GO:0003677|GO:0005634
Pvu2g2373 224 ProSiteProfiles Zinc finger SBP-type profile. 116 195 IPR004333 GO:0003677
Pvu2g2373 224 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 72 165 IPR044817 GO:0003677
Pvu2g2373 224 Pfam SBP domain 119 166 IPR004333 GO:0003677
Pvu2g2373 224 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 72 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2373 Pvu-Chr2 39608101 39610326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2373 117 167 SBP-box Gene Family AT1G02065 66.667 3.54e-21 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu2g2373 SBP 2.8e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2373 2 39608101 39610326 Pvu6g1908 6 29283875 29285790 PCT