Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1105 ATGCTCATGGCATCTGCAGGAACAAGGAGTTTAGTTATGGCAGAAAACAAAGACGAAACCTATTCTGAAACTTCTGAATGTTCATCAGCCTTAACCATGCCAATGGCTACCAAGTGCAGATACTTGTTTCATAGATTATGCGGTTCTACCAATTCATGGAACAAAAGCACCCCCCCAAAAGGTCGAAGAATTTTCCACAGGGATGTGGAAAAAGAAGAATTCCAGTATGCTAGTAGTCACTGTCTCTCATCCTACTACAGTGTCTTTGTGGTTCGACTAGCAATCATGGTCATGCTAGCCATCTTGATAGGGCTTCTCACTATACTGACATGGCATTTCACGAAGATTTATACAGCAAAATCGCTTAACAGTTTGGCATATGGTTTGCGTTATGAACTCCTGCAACGCCCAGTTTTGAGGATGTGGAATATTTTGAACTCTACTTCTGAAATTACTACAGCTCAGGTCAAGCTGTCTCAGTATGTGATCAGACGTCACAGCAACCCTGCGACTCAAGCAGAACAAGTTGAGCTGTATGAAGCGATGAGGGCAGTAACATGGGCTTTATTTGCTAGTCGGAAAGCTCTAAACTCTATAACTATCAACTATAAGAATGGATTTGTGCACGCATTCCACAGAGATCTGAAGGACAACAACACATTTTACATCTATTCTGATCTTTCAAATTACTCCATGGGAGCCAGCAACTCTAATGAGGTCAATTCCGTTTCAACACATCAAGCATGGGATGATAAAGCCCTTCGTGGAAACTATTCAGCAATCTGGTACCGTGAGCCACTTGACCCTGTGAGTGGTGAAAAGATAGGAAAAGCTATGAAAATTGCGCCTGAAGACTTGATCAACATAGCTGGCTTTTCCCAAGTACCTGATGGTGTAGCTTCTTGGCATGTTTCCGTAAGCAAGTTCACAGATTCACCACTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATAAGACCATTATGGCAGTTGTGGGGGTCACAACTGCACTTTATAGTGTAGGACAGTTAATGAGAGAGCTTGTTGAGTTGCACAGTGGTCATATGTACTTGACTTCCCAAGAGGGTTATTTACTGGCAACTTCCACAAGTGCACCTCTTCTGGCAAATTCAACCAAGCCTAAGCTTAAGATGGCCGTTGACTGTGAAGATGACATAATTCGACAGGGAGCTGAGTGGTTGCAGAGAACTTATGGGAACAATTTCCCTCCAAGTCACGAGGTGCATGTAGAAAATGTCAAGCTAGGCCAAAAGACATATTACATTGACTCGTTCTTCCTACATTTGAAGAGACTTCCTTTGGTAGGTGTGATTATCATACCAAGAAAGTATATCATGGGACAGGTAGACGAAAGAGCCTTCAAAACGCTGGTTATTCTGATATCTGCATCATTATGTATTTTAGTCATTGGGTGTGTTTGCATTTTGATATTGACAAACGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTGATAAGTCAACTTGAAGCAAGAAGAAAAGCAGAGGCATCAAGCAATTATAAAAGTCAATTCCTTGCAAACATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATTGGGTTGCTTGACATTCTCATATCTGATGACTGTCTCACAAATGAACAATATTCAACCGTTACTCAAATAAGAAAATGCTCAACTGCTCTGCTCCGTCTTCTTAACAACATCTTGGATCTGAGTAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTAGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTCCAGTGCATTAACCACAATGTGGAGACTGTTTTAGACTTGTCTGATGATATGCCAAAGATCGTCCGGGGTGATTCTGCAAGGGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTTACTCCATCGGGTCATATTGTTCTGCGAGGATGGAGTGAAATCCCAAATTCTTCCGTTGGCAGTCCAAATTTTCCTCTTGACCAGAAGAAATTATGGAGTTTACAGAAGTGCAGAGAGAAACCAAATGCAAATCATTCAAAAAAGGCATCTATAAAAGACAACAAAGTGATACTTTGGTTTGAAGTTGAGGACACGGGCTGTGGTATTGACCCAAGCAAGTGGGATTCCGTGTTCGAAAGCTTTGAGCAAGCTGATCCATCTACTACTCGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGAAACTTGGTTAACAAGATGGGTGGGCACATCAAGGTAGTAAAAAAGGAGGGCGCAGGAACACTGATGCGATTATGCTTGCTTCTCAGTGCGCCCATGGATATCACAGAACAACAGTGTGCAGTAGATTTGACAGACAGTGGCTTAGTGGTACTGCTCGGCTTACATGGCAACATGGGTCGATTAATTACATCCAAGTGGCTTCAGAAAAACGGGGTGTGCACAATGGAAGCATCTGACTGGAATGGACTAACTCAAATTTTGAGGGAACTATTTCATGCTAGAAGTTCAGTGCATAATACTGACTTTGATGCACACTATTCAGCAAAAGAGGAATTGAAGTCTAAACTACTCAACATACGAGACATGAGGAACCCAGTATTTGTCATTGTTGTTGACATTGGATTACTTGACTTGAGCACAGATATATGGAAGGAACAACTTAACTTCCTTCATAGGTACTTTGGTAGAGCAAAGTTCCTATGGATGCTAAATCATGACACTTCCAATAACATAAAGATGGAGCTCCGTAGGAAAGGGCATATACTGATGGTCAACAAACCCCTTTACAAAGCAAAAATGATCCATATTTTGGAATCCGTCATAAAGGAGAGAAATTTTGAGCTACAAAAGAAAAACATGATTGTTCCAAGGACAGCAATGAAAGAGGGAGATTTACACGAATTTCTTGAGATTGATTCCACTCATTTTGATGCTGCTAGCTCTGATGATTCTGACCTATCTGACATAGCTGGTTCTAATCCTGTTAGTGCTAATGGAGATAAACCAGTTGAGAAGCTAGACAAATCTCATCCATCATCACCATACCATATGAATAACTGCCTAGATAGATTAACCAATGCAAATGAATGTTTGGAGGAAAATAATTTGAGGAAAGAAGAATCTTCTAGTCCCAGCTCCAATTATGCCACTGAAGACAACCAACCTAAATCACTGTCTACCAAAGAATCACCATCCATTTCAACAGGAGATCAGGATGAAGATTCTGAATGTAGGGAAACACATAGGGTCACCAGCTCAAGTAAAGCAGTAGATGGAAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCGGTACTTCAAAGGGTTGCAACCATAATGCTTGAGAAAATGGGAGCAGATGTAGTTGCTGTAGGTGATGGACAACAGGCAGTAGAAGCTCTCAGTTGCATGTTCACTGCTGAAGATTGTAGAAGGGAATCACTCCAGAAGGAAAGAAACACAAGATCTCAAACAGAGATTTTGACTAGCCGTCCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTACGAGGCAACCAAAGAAATCAGGAAATCAGAAGTGGGAACAAGCTTGCACATTCCCATTGTTGCTCTTACAGCACATGCAATGTCATGTGATGAGGCCAAATGCCTGGATGTGGGCATGGATGCTTATTTGACAAAGCCAATTGATTTCAAAATGATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCTTGA 3783 0.4148 MLMASAGTRSLVMAENKDETYSETSECSSALTMPMATKCRYLFHRLCGSTNSWNKSTPPKGRRIFHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLNSLAYGLRYELLQRPVLRMWNILNSTSEITTAQVKLSQYVIRRHSNPATQAEQVELYEAMRAVTWALFASRKALNSITINYKNGFVHAFHRDLKDNNTFYIYSDLSNYSMGASNSNEVNSVSTHQAWDDKALRGNYSAIWYREPLDPVSGEKIGKAMKIAPEDLINIAGFSQVPDGVASWHVSVSKFTDSPLLSAALPVWDSSNKTIMAVVGVTTALYSVGQLMRELVELHSGHMYLTSQEGYLLATSTSAPLLANSTKPKLKMAVDCEDDIIRQGAEWLQRTYGNNFPPSHEVHVENVKLGQKTYYIDSFFLHLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKIVRGDSARVVQIFANLINNSIKFTPSGHIVLRGWSEIPNSSVGSPNFPLDQKKLWSLQKCREKPNANHSKKASIKDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGHIKVVKKEGAGTLMRLCLLLSAPMDITEQQCAVDLTDSGLVVLLGLHGNMGRLITSKWLQKNGVCTMEASDWNGLTQILRELFHARSSVHNTDFDAHYSAKEELKSKLLNIRDMRNPVFVIVVDIGLLDLSTDIWKEQLNFLHRYFGRAKFLWMLNHDTSNNIKMELRRKGHILMVNKPLYKAKMIHILESVIKERNFELQKKNMIVPRTAMKEGDLHEFLEIDSTHFDAASSDDSDLSDIAGSNPVSANGDKPVEKLDKSHPSSPYHMNNCLDRLTNANECLEENNLRKEESSSPSSNYATEDNQPKSLSTKESPSISTGDQDEDSECRETHRVTSSSKAVDGKKSLEGLKILLAEDTPVLQRVATIMLEKMGADVVAVGDGQQAVEALSCMFTAEDCRRESLQKERNTRSQTEILTSRPYDLILMDCQMPKMDGYEATKEIRKSEVGTSLHIPIVALTAHAMSCDEAKCLDVGMDAYLTKPIDFKMMVSTILSLTKTTS* 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1105 1260 Pfam His Kinase A (phospho-acceptor) domain 517 582 IPR003661 GO:0000155|GO:0007165
Pvu2g1105 1260 SMART REC_2 1110 1252 IPR001789 GO:0000160
Pvu2g1105 1260 Gene3D - 504 583 - -
Pvu2g1105 1260 ProSiteProfiles Response regulatory domain profile. 1111 1256 IPR001789 GO:0000160
Pvu2g1105 1260 PRINTS Bacterial sensor protein C-terminal signature 706 720 IPR004358 GO:0016310|GO:0016772
Pvu2g1105 1260 PRINTS Bacterial sensor protein C-terminal signature 724 734 IPR004358 GO:0016310|GO:0016772
Pvu2g1105 1260 PRINTS Bacterial sensor protein C-terminal signature 741 759 IPR004358 GO:0016310|GO:0016772
Pvu2g1105 1260 MobiDBLite consensus disorder prediction 1051 1077 - -
Pvu2g1105 1260 PANTHER TWO-COMPONENT HISTIDINE KINASE 35 1257 - -
Pvu2g1105 1260 MobiDBLite consensus disorder prediction 1046 1101 - -
Pvu2g1105 1260 SUPERFAMILY CheY-like 1108 1256 IPR011006 -
Pvu2g1105 1260 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 571 777 IPR036890 -
Pvu2g1105 1260 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 629 779 IPR003594 -
Pvu2g1105 1260 Coils Coil 1032 1052 - -
Pvu2g1105 1260 CDD HisKA 517 578 IPR003661 GO:0000155|GO:0007165
Pvu2g1105 1260 SMART HisKA_10 516 582 IPR003661 GO:0000155|GO:0007165
Pvu2g1105 1260 PANTHER OSMOSENSOR HISTIDINE KINASE 35 1257 - -
Pvu2g1105 1260 ProSiteProfiles Histidine kinase domain profile. 523 781 IPR005467 -
Pvu2g1105 1260 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 504 583 IPR036097 GO:0000155|GO:0007165
Pvu2g1105 1260 Pfam Response regulator receiver domain 1112 1251 IPR001789 GO:0000160
Pvu2g1105 1260 MobiDBLite consensus disorder prediction 1078 1101 - -
Pvu2g1105 1260 MobiDBLite consensus disorder prediction 991 1031 - -
Pvu2g1105 1260 SMART HKATPase_4 629 781 IPR003594 -
Pvu2g1105 1260 CDD REC_hyHK_CKI1_RcsC-like 1112 1252 - -
Pvu2g1105 1260 Gene3D - 584 781 IPR036890 -
Pvu2g1105 1260 Gene3D - 1088 1258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1105 Pvu-Chr2 21585247 21592897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1105 34 1260 Histidine Kinase Gene Family AT2G17820 63.878 0.0 1567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu2g1105 HATPase_c 1.5e-23 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1105 2 21585247 21592897 Pvu2g1105 2 21585247 21592897 ECH
Pvu2g1105 2 21585247 21592897 Pvu3g2723 3 49180437 49187253 PCT