Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2738 ATGGCTTCTACTGGTACTGTGTTTTATGCGCTTCTGCTAGCGGTGGTGGTTAGCTCCATGGTGGCTCAATGTGCTGCTAACTTCTACCAAGACTTTGATCTCACATGGGGTGACCACCGTGCTAAGATATTCGGTGGTGGTCAGCTTCTATCTCTTTCCCTGGACAAAGTCTCTGGCTCTGGCTTCCAATCCAAGAAAGATTACTTATTTGGAAGGATCGATATGCAGCTCAAACTCGTCGCTGGCAACTCTGCTGGCACTGTTACTGCTTACTACTTGTCATCTCAGGGGCCAACTCATGACGAGATTGATTTTGAATTCTTGGGAAACGTGAGCGGCGACCCTTATATTCTCCATACAAACGTGTTCACCCAAGGCCAAGGAAACAGAGAGCAACAGTTCTATCTCTGGTTCGATCCCACCAGAAACTTCCACACTTACTCCATCATCTGGAAGCCCCAACACATTATCTTCTTGGTGGACAACATTCCCATAAGGGTGTTCAAGAATGCTGAGAGTGCTGGTGTTCCTTTCCCAAAGAACCAACCCATGAGAATCTACTCTAGCCTGTGGAATGCTGATGACTGGGCAACAAGAGGTGGTTTGGTGAAAACTGATTGGTCCAAGGCACCATTTACAGCATACTACCGCAATTTCAAAGCCACAGGGTTCTCTGTGTCTTCCAATTCATTATCTGATTCTGCATGGCAGAGCACGGAGCTTGATGCGTATGGCAGAAGAAGACTGAGATGGGTTCAGAAGTACTTCATGATCTATAACTACTGCAACGACCTCAAGCGATTCCCACAAGGCCTCCCTGCAGAGTGCAAGCGCTGA 837 0.4755 MASTGTVFYALLLAVVVSSMVAQCAANFYQDFDLTWGDHRAKIFGGGQLLSLSLDKVSGSGFQSKKDYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTQGQGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNAESAGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATGFSVSSNSLSDSAWQSTELDAYGRRRLRWVQKYFMIYNYCNDLKRFPQGLPAECKR* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2738 278 Pfam Glycosyl hydrolases family 16 29 209 IPR000757 GO:0004553|GO:0005975
Pvu1g2738 278 PIRSF EndGlu_transf 1 278 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pvu1g2738 278 CDD GH16_XET 25 276 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pvu1g2738 278 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 277 IPR013320 -
Pvu1g2738 278 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 15 10 278 - -
Pvu1g2738 278 ProSitePatterns Glycosyl hydrolases family 16 active sites. 102 112 IPR008263 GO:0004553|GO:0005975
Pvu1g2738 278 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 22 216 IPR000757 GO:0004553|GO:0005975
Pvu1g2738 278 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 233 276 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Pvu1g2738 278 PRINTS Glycosyl hydrolase family 16 signature 60 78 IPR008264 GO:0004553|GO:0005975
Pvu1g2738 278 PRINTS Glycosyl hydrolase family 16 signature 118 131 IPR008264 GO:0004553|GO:0005975
Pvu1g2738 278 PRINTS Glycosyl hydrolase family 16 signature 136 153 IPR008264 GO:0004553|GO:0005975
Pvu1g2738 278 Gene3D - 13 278 - -
Pvu1g2738 278 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 10 278 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2738 Pvu-Chr1 51852021 51853862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2738 2 278 Glycoside Hydrolase AT4G14130 74.386 3.13e-160 445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2738 1 51852021 51853862 Pvu1g2738 1 51852021 51853862 ECH