Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2363 ATGGTGTTGTCTTGGACTAGAAGAAACGTTTTCCGTCGTGCCAAGAAGGAGAAGGGACAGATTCAAGGTGATGGTTGTGGTGGTGAGTTGGAGGTGGAGGTTGTCATCCCCAACCACTTTCGGTGTCCGGTGAGTTTGGAGTTGATGACGGACCCGGTCACTTTATCGACCGGCATCACCTACGACAGGGTCAGCATTGAGAAGTGGATTGAGGGAGGGAACAAGACCTGCCCCGTCACCAACCAGGTGCTCACAACCTTTGACACCATCCCCAACCATGTCATTCGTAGGATGATTCAGGATTGGTGTGTTGAAAACAGCTCTTATGGGTTTCAGAGGATCCCCACTCCTCGGATTCCTCTCTCCAGCTACGACGTTTCTCAGACATGTACGAGGATCTTGTCGGCTTCTCAGCGTGGGGATGATAAAAAGTGCCAGGAGTTGGTTGGGAAGATTAAGGTTTGGGGGAGAGATGAGAGGAACAAGAGGTTCATAATTGGGAATCATTCTGGAACTGATGCTGGCAATAGTCCCGATGCAGTTCTTGCATATGCCTTTGATTGTTTCTCAAGGGGTGACTCTTTTGACAAGCATGTGGTTGTTTTGGAGGAGATTTTGGAGGTGCTCACATGGATGATCCCACTTGGGGAAGAGGGTGTGTCTAAATTGAGTTCAAAGGCTTCATTGAATTGCATGGTCTGGTTTCTAGAGGGGAAAGACCTTGCATCAAGGCAAAGTGCTGCTTTGTTGCTCAGGCAAGTGTGTGTTCAAGAATTGGCCAAAGTTGGAAAAATTGTTGAAGCTTTGGTTACTATGATCAGGGAGCCTATTGGGAGTGCTTCCACCAAGGCTTGTTTGACAACAATTTTTAACTTGGTGTCATCTGCTGAGAACAGAGGGGAAATTGCTCAAAAATTTGTGGAATTGGATTTGGTTTCACTTTTGCTAGAGGCTATTGTTGATGGAGAGAAAGGGGTGTGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGATATCCAGAAGGGTAAGGAGGTTGTTAAAAACAATGCTCTTACTTTGCCTCTTGTCGTTAAGAAGCTTTTGAGGGTGTCACCATTGGCTTCAAGTTTTGCTGTCTCTATTCTTAAGAAGAATTCTGACAAGAAGGAGGAAGAGGCTCTGATTGAGGCAGTTCAACTTGGAGCTTTTCAAAAGCTCTTGGTTTTGCTGCAGGTTGGTTGTGATGAGAGAACAAAGGAGAATGCTACAGAGTTGTTGAAACTGTTGAACGGTTATAGGAACAAAGCCAAGTGCACTGACTCATCATCGGATTTCAAGTATCTTAAGAAGTCATTCTGA 1341 0.4571 MVLSWTRRNVFRRAKKEKGQIQGDGCGGELEVEVVIPNHFRCPVSLELMTDPVTLSTGITYDRVSIEKWIEGGNKTCPVTNQVLTTFDTIPNHVIRRMIQDWCVENSSYGFQRIPTPRIPLSSYDVSQTCTRILSASQRGDDKKCQELVGKIKVWGRDERNKRFIIGNHSGTDAGNSPDAVLAYAFDCFSRGDSFDKHVVVLEEILEVLTWMIPLGEEGVSKLSSKASLNCMVWFLEGKDLASRQSAALLLRQVCVQELAKVGKIVEALVTMIREPIGSASTKACLTTIFNLVSSAENRGEIAQKFVELDLVSLLLEAIVDGEKGVCEKALGVLDCICDIQKGKEVVKNNALTLPLVVKKLLRVSPLASSFAVSILKKNSDKKEEEALIEAVQLGAFQKLLVLLQVGCDERTKENATELLKLLNGYRNKAKCTDSSSDFKYLKKSF* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2363 446 Gene3D - 221 433 IPR011989 -
Pvu1g2363 446 SMART Ubox_2 39 102 IPR003613 GO:0004842|GO:0016567
Pvu1g2363 446 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 18 446 - -
Pvu1g2363 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 109 IPR013083 -
Pvu1g2363 446 PANTHER WDSAM1 PROTEIN 18 446 IPR045185 GO:0061630
Pvu1g2363 446 SUPERFAMILY RING/U-box 31 111 - -
Pvu1g2363 446 ProSiteProfiles U-box domain profile. 35 109 IPR003613 GO:0004842|GO:0016567
Pvu1g2363 446 CDD RING-Ubox_PUB 40 82 IPR045210 -
Pvu1g2363 446 Pfam U-box domain 36 107 IPR003613 GO:0004842|GO:0016567
Pvu1g2363 446 SUPERFAMILY ARM repeat 197 423 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2363 Pvu-Chr1 48969145 48970805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2363 28 446 U-box Gene Family AT5G37490 48.009 2.73e-123 363
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2363 1 48969145 48970805 Pvu1g2363 1 48969145 48970805 ECH
Pvu1g2363 1 48969145 48970805 Pvu8g2467 8 55277984 55280310 PCT