Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1716 ATGAGGGAGGAAGAAATCGAGAAGCTCCGAGGTGTGGTGCGCGACTGCGTGAGCAAACACCTTTATTCCTCCGCCATCTTCTTCGCCGATAAAGTTGCCGCCTTCACCGCCGACCCCGCCGACATCTACATGCAGGCGCAGGCGCTCTTCCTTGGCCGCCACTACCGCCGTGCCTTCCACCTCCTCAATGCTTCCAAAATCGTTCTCAGCGACCTCCGATTCCGCTACCTCGCCGCCAAGTGCCTTGAGGAATTGAAGGAGTGGGATCAGTGCCTGTCGATGCTGGGTGAGGCTAAAGTGGATGACGAAGGAAATGTTTATGATACGAAGGACTCGAATGTCATGTACTTGGATAAAGATTGTGAAGATCGTGAAATTAATATATCTTCTGCAATATGCTTCTTAAGAGGAAAAGCATACGAGGCTCTAGAAAACCGTGCCCAGGCTAGACTGTGGTATAAAGCTGCTATAAAAGCGGATCCTTTATGTTATGAGGCTTTGGAATGTCTTATTGAGAATCACATGCTTACTTGCCAGGAAGAAGCAAATTTGATATCGTCATTGCAATTTGGTAGTGAGGATGGATGGCTTTCTTCATTTTATTCTTGTTTGATAAAGAAGTATGACAAAGAAAACGTTGTAGAAGCCAAGTTCCGAGAACTTGAGAATGAAAGCTGTAAAAGTGACCAATCTGATACTTCTTTCTTGCGCTCACTGAAATCCAATACCGATCTATTGGCCTGCAAAGCTGAATACTACCATCAGTGTGGTGAATATCAGAAATGTTTTGACTTAACATATGTTTTGCTTGAGAAGGATCTTTTCCATCTGAAGTGTACGTTAGTACACCTGGCAGCTGCTGTTGAACTTGGGCATTCAAATGAACTCTATTTGATGGCGTGCAATTTGGTGAAGGATTATCCTCAGATGGCTTTATCATGGTTTGCTGTTGGTTGCTACTACTACTGTATCAAGAAGTATGATCAATCCCGTCGTTATTTTAGCAAGGCAACTAGTCTAGATGGAACATTTCCCCCTGCATGGATAGGCTATGGGAATGCTTATGCTGCTCAAGAAGAGGGTGATCAGGCTATGTCAGCTTACCGCACTGCAGCTAGATTGTTTCCTGGGTGCCACTTACCAACTCTTTACATTGGAATGGAATGCATGCGTACCCACAGCTATAAGCTTGCTGAGCAGTTTTTTATACAGGCCAAGTCAACTTGCCCCTCAGATCCACTTGTGTATAATGAACTTGGAGTTGTTGCCTATCATATGAAAGAGTATAAGAAAGCTGTCTGGTGGTTTGAGAAAACATTAGCATTGATACCAACTGCTTTATCTGAAATGTGGGAATCGACTGTAGTCAATCTTGCCCATGCATACAGAAAACTGAAGATGTACGGAGAAGCAATTTCGTATTATGAGAAGGCACTTGCATTATCAACGAGAAGTGTGAGCACTTATGCTGGTCTTGCATATACTTATCACTTACAGGATGATTTCACTACAGCAATAACATATTATCACAAAGCCTTGTGGCTGAAACCAGATGATCAGTTCTGCACTGAGATGTTAAGTTGGGCTCTAATAGATGAAAAGTCAAATGGGCTTTGA 1617 0.4348 MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTADPADIYMQAQALFLGRHYRRAFHLLNASKIVLSDLRFRYLAAKCLEELKEWDQCLSMLGEAKVDDEGNVYDTKDSNVMYLDKDCEDREINISSAICFLRGKAYEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTCQEEANLISSLQFGSEDGWLSSFYSCLIKKYDKENVVEAKFRELENESCKSDQSDTSFLRSLKSNTDLLACKAEYYHQCGEYQKCFDLTYVLLEKDLFHLKCTLVHLAAAVELGHSNELYLMACNLVKDYPQMALSWFAVGCYYYCIKKYDQSRRYFSKATSLDGTFPPAWIGYGNAYAAQEEGDQAMSAYRTAARLFPGCHLPTLYIGMECMRTHSYKLAEQFFIQAKSTCPSDPLVYNELGVVAYHMKEYKKAVWWFEKTLALIPTALSEMWESTVVNLAHAYRKLKMYGEAISYYEKALALSTRSVSTYAGLAYTYHLQDDFTTAITYYHKALWLKPDDQFCTEMLSWALIDEKSNGL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1716 538 ProSiteProfiles TPR repeat profile. 452 485 IPR019734 GO:0005515
Pvu11g1716 538 SUPERFAMILY HCP-like 313 520 - -
Pvu11g1716 538 Pfam Tetratricopeptide repeat 132 161 IPR019734 GO:0005515
Pvu11g1716 538 PANTHER CELL DIVISION CYCLE 16,23,27 6 536 - -
Pvu11g1716 538 ProSiteProfiles TPR repeat profile. 413 446 IPR019734 GO:0005515
Pvu11g1716 538 Pfam Tetratricopeptide repeat 491 510 IPR011716 -
Pvu11g1716 538 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Pvu11g1716 538 SUPERFAMILY TPR-like 41 174 IPR011990 GO:0005515
Pvu11g1716 538 Pfam Tetratricopeptide repeat 415 482 - -
Pvu11g1716 538 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 97 - -
Pvu11g1716 538 ProSiteProfiles TPR repeat profile. 345 378 IPR019734 GO:0005515
Pvu11g1716 538 PANTHER CELL DIVISION CYCLE PROTEIN 16 HOMOLOG 6 536 - -
Pvu11g1716 538 Pfam Tetratricopeptide repeat 319 377 - -
Pvu11g1716 538 ProSiteProfiles TPR repeat profile. 311 344 IPR019734 GO:0005515
Pvu11g1716 538 Gene3D Tetratricopeptide repeat domain 5 532 IPR011990 GO:0005515
Pvu11g1716 538 SUPERFAMILY TPR-like 243 340 IPR011990 GO:0005515
Pvu11g1716 538 SMART tpr_5 379 412 IPR019734 GO:0005515
Pvu11g1716 538 SMART tpr_5 486 519 IPR019734 GO:0005515
Pvu11g1716 538 SMART tpr_5 311 344 IPR019734 GO:0005515
Pvu11g1716 538 SMART tpr_5 413 446 IPR019734 GO:0005515
Pvu11g1716 538 SMART tpr_5 452 485 IPR019734 GO:0005515
Pvu11g1716 538 SMART tpr_5 345 378 IPR019734 GO:0005515
Pvu11g1716 538 SMART tpr_5 130 163 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1716 290 518 Glycosyltransferase AT3G04240 23.504 1.31e-10 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1716 11 43444253 43454952 Pvu11g1716 11 43444253 43454952 ECH