Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1709 ATGGAGGCCAGGACTGTGGAGAGGAAGAGATCACTGGTTGAGAGGGTGGAGGAGGAAGTGGAAAATGAAGTGGAAGAGGAGGATGAAAGTGGTGCTAGTCTCACAGAAGATGACAAAAAGAGAGGGCTTAGTAGCAATAGTGGTGGCGGGAGAAGAGGGTCAAGTGGAGGTGGTGGAGGGGTTTCTCCACCTTCCTGTCAAGCAGAGAGGTGTGGTGCTGATTTGACTGATGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGTTTCACTCCAAAGCTCCTGCTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCGGAGTTTGATGAGTCTAAGAGAAGCTGCCGGAGGCGGTTGGCCGGACACAACGAACGGCGCCGGAAAAGCAACCCTGAAGCTTGCAGTGATGGCAGCAAAGGCCATCACCACCCTAAGGAAACAACACACTGCAGGCTTGCTGATGAGAGGGGGAGAATTCAGATGAACCTACCAGGGAGTTCTGGCTACAAGTCTTTCAACATCAGATGA 561 0.5294 MEARTVERKRSLVERVEEEVENEVEEEDESGASLTEDDKKRGLSSNSGGGRRGSSGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPAVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNPEACSDGSKGHHHPKETTHCRLADERGRIQMNLPGSSGYKSFNIR* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1709 186 MobiDBLite consensus disorder prediction 1 67 - -
Pvu11g1709 186 MobiDBLite consensus disorder prediction 136 167 - -
Pvu11g1709 186 SUPERFAMILY SBT domain 64 144 IPR036893 GO:0003677|GO:0005634
Pvu11g1709 186 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 151 IPR044817 GO:0003677
Pvu11g1709 186 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 151 - -
Pvu11g1709 186 Pfam SBP domain 66 139 IPR004333 GO:0003677
Pvu11g1709 186 Gene3D - 56 127 IPR036893 GO:0003677|GO:0005634
Pvu11g1709 186 Coils Coil 6 26 - -
Pvu11g1709 186 MobiDBLite consensus disorder prediction 1 17 - -
Pvu11g1709 186 MobiDBLite consensus disorder prediction 18 32 - -
Pvu11g1709 186 MobiDBLite consensus disorder prediction 130 186 - -
Pvu11g1709 186 ProSiteProfiles Zinc finger SBP-type profile. 63 140 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1709 Pvu-Chr11 43283587 43284947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1709 50 144 SBP-box Gene Family AT1G53160 69.474 1.33e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu11g1709 SBP 1.2e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1908 6 29283875 29285790 Pvu11g1709 11 43283587 43284947 ECH
Pvu5g0765 5 12924825 12926343 Pvu11g1709 11 43283587 43284947 ECH
Pvu11g1709 11 43283587 43284947 Pvu6g1908 6 29283875 29285790 ECH
Pvu11g1709 11 43283587 43284947 Pvu11g1709 11 43283587 43284947 ECH
Pvu5g0765 5 12924825 12926343 Pvu11g1709 11 43283587 43284947 PCT