Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1704 ATGGAGTATGCAGCACAACAGGGAGACATAGATAGTCTATACAGATTGATTGAGCAGAATCCACATATTTTAGAAGAGATAGATTTGATACCATTTGTCGAAACTCCTTTGCATGCTGCTGCACGTGCAGGGCATGTTCAATTTGCCAAAGAAATCATGATATTAAAACCTTCATTTTCTTGGAAATTCAGTCCTCAAGGATTGACACCGGTTCACCTTGCTCTACAAAATCGCAATCCCAGAATGGTCTTTCACCTTATACAGATGGACACGAGTCTCGTTCGAGCCAAAATGAGAGGAGGTCTCACTCTTCTGCATTTGGCAAGTCAATCCGGAGATATAAACCTTTTAACTGTGTTTCTCAAAGTTTGTCCTGATTCCATACAAGATTTGACTAGTAAGAATGAGACTGCACTGCATTTATACAAGAGGTTTGAGGTTTTGGAGTTCTTACTTAGATGGCTTAAGAGAAATATTATTGAGTTACAAACCATTCTGAAGCAGAAAAACTTGGAGGGCAACACTATTTTACACATTGCAGCAACAAAAAATGACACGAAGGTATCATTTAAATCTATCTATCTC 585 0.3846 MEYAAQQGDIDSLYRLIEQNPHILEEIDLIPFVETPLHAAARAGHVQFAKEIMILKPSFSWKFSPQGLTPVHLALQNRNPRMVFHLIQMDTSLVRAKMRGGLTLLHLASQSGDINLLTVFLKVCPDSIQDLTSKNETALHLYKRFEVLEFLLRWLKRNIIELQTILKQKNLEGNTILHIAATKNDTKVSFKSIYL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1704 195 SMART ANK_2a 32 61 IPR002110 GO:0005515
Pvu11g1704 195 SMART ANK_2a 66 95 IPR002110 GO:0005515
Pvu11g1704 195 SMART ANK_2a 100 130 IPR002110 GO:0005515
Pvu11g1704 195 SUPERFAMILY Ankyrin repeat 3 187 IPR036770 -
Pvu11g1704 195 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 4 182 - -
Pvu11g1704 195 Gene3D - 1 191 IPR036770 -
Pvu11g1704 195 PANTHER HOMEOBOX PROTEIN WARIAI 4 182 - -
Pvu11g1704 195 Pfam Ankyrin repeats (3 copies) 2 88 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1704 Pvu-Chr11 43167787 43168451 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1704 6 188 Miscellaneous Gene Families AT5G54610 42.328 3.18e-50 166