Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1689 ATGGCTCCCAGTGACAACAGATCCAGCCACGTATCCGGGTCTAATTCGACCCGTTTGGACAAGGAGATCCGATACCGCGGGGTCAGGAAGAGACCGTGGGGCCGCTACGCCGCCGAGATCCGCGACCCCGGGAAGAAAACACGCGTCTGGCTCGGTACCTTCGACACCGCGGAGGAGGCCGCGCGTGCGTACGATGCGGCGGCGCGTGATTTCCGCGGCGCGAAGGCCAAGACGAATTTTCCCACACACGCGGAACTTACCCACCTGGGGCGTAGCCCCAGCCAGAGCAGCACGCTCGAGTCCCCGTCTCCGCCGCCGCTTGACCTCACTCTCACCCCACTCGCTTCCTCCGGCGCGTTCGTCTTCCCCGTCGCCCGCCCCGTGGTTTTCTTCGACGCGTTCGCGCGTGCGGAGGTGCGCGCTTTCGATCTTCCCGTGAGCGCCTTCCGCCGCACCGCCGCCGCCGCCAGCCAGAGTGAATCCGAGTCGTCCTCCGTGGTGGACTACGAGCGGGTCCCACATGGGAGAGTGTTGGATCTCGACCTGAATGTTCCTCCTCCGCCCGAGGTTGCATGA 576 0.658 MAPSDNRSSHVSGSNSTRLDKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAARDFRGAKAKTNFPTHAELTHLGRSPSQSSTLESPSPPPLDLTLTPLASSGAFVFPVARPVVFFDAFARAEVRAFDLPVSAFRRTAAAASQSESESSSVVDYERVPHGRVLDLDLNVPPPPEVA* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1689 191 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Pvu11g1689 191 CDD AP2 24 83 IPR001471 GO:0003700|GO:0006355
Pvu11g1689 191 MobiDBLite consensus disorder prediction 1 16 - -
Pvu11g1689 191 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 180 - -
Pvu11g1689 191 MobiDBLite consensus disorder prediction 1 23 - -
Pvu11g1689 191 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Pvu11g1689 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 15 180 - -
Pvu11g1689 191 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Pvu11g1689 191 MobiDBLite consensus disorder prediction 85 105 - -
Pvu11g1689 191 MobiDBLite consensus disorder prediction 88 105 - -
Pvu11g1689 191 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Pvu11g1689 191 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Pvu11g1689 191 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Pvu11g1689 191 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1689 Pvu-Chr11 42720583 42721619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1689 21 150 AP2-EREBP Transcription Factor Family AT3G15210 61.184 1.23e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu11g1689 AP2 5.9e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1689 11 42720583 42721619 Pvu6g1900 6 29213340 29215073 ECH
Pvu11g1689 11 42720583 42721619 Pvu11g1689 11 42720583 42721619 ECH
Pvu11g1689 11 42720583 42721619 Pvu11g1292 11 26734318 26735830 ECH