LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g1656	ATGACTTGTTGCTTTCATCTTTTCAGAAAGAAAGGATCTTCCTCAGACACTCGATTGACCGGAGTTGATTTAGATGTTTCAGAAATTCAGAATGTCAATATCTACACTTACAAGGAACTGCGAAATGCCACCGCAGGTTTTAGTCCTGCAAACAAGATAGGGCAGGGAGGTTTTGGAGAAGTCTATAAGGGAAAGCTGAGAAATGGTTCTCAGGTAGCTATAAAGGTTTTATCAGCTGAATCAAGACAAGGGGTCCGAGAGTTTTTGACAGAAATCAAGGTGATTTCTAGTATAGAGCACGAGAATCTGGTTAAGTTGCATGGATGTTGTGTGGAAGGCAAGCACAGGATTTTGGTATATGGCTATCTCGAGAATAACAGCCTAGCACAAACACTTATTGGTTCAGGCCACAGTAGCATCCAATTCAGTTGGTCTACAAGAAGGAACATTTGTGTAGGTGTTGCCCGGGGCCTTGCATTCCTTCATGAAGAGGTTCGGCCACAAATTATCCACAGAGACATAAAAGCAAGCAATGTACTACTCGACAAAGATCTCCAGCCAAAAATTTCAGATTTTGGGCTTGCAAAGCTTATTCCACCAAACCTGACCCATATCAGTACACGTGTTGCTGGAACAGCTGGTTATCTAGCACCTGAATATGCAATCCGAAATCAAGTGACTAGAAAATCAGATGTTTATAGCTTTGGAGTTTTATTATTAGAAATTGTTAGCGGAAGGCCTAACACAAATAGACGTTTACCTGATGAAGAACAGTATCTTCTCACAAGGGCTTGGGATTTGTATGAGGGTGGGGAGACAGAAAAATTGGTGGATGCTTTTCTAGATGGAGACTTCAATATTGAGGAGGCAATCAGATTTTGTAAAATTGGTCTCCTTTGCACTCAGGATTCTCCTCACCTCCGGCCCTCTATGTCCACTGTGCTTGAAATGCTTTTAGGTGAAAAAGATTTGAATGAGGAGAATGTGACAAAACCAGGCATGATATTTGAATTTGTGGAAGCCAAAAGTGCAGGGAAACAAAAGGGCAAGTCTGAAGAGAAAGGTAATTTTTTGTTGGCTGAAGGGAAGCAAGATGAGTCATCTTCTTCAGAAACCATGAGCTCTTTTGCTACCATGACCTTCACAGCAATATATGATCGAAGCAATTAA	1170	0.4128	MTCCFHLFRKKGSSSDTRLTGVDLDVSEIQNVNIYTYKELRNATAGFSPANKIGQGGFGEVYKGKLRNGSQVAIKVLSAESRQGVREFLTEIKVISSIEHENLVKLHGCCVEGKHRILVYGYLENNSLAQTLIGSGHSSIQFSWSTRRNICVGVARGLAFLHEEVRPQIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTAGYLAPEYAIRNQVTRKSDVYSFGVLLLEIVSGRPNTNRRLPDEEQYLLTRAWDLYEGGETEKLVDAFLDGDFNIEEAIRFCKIGLLCTQDSPHLRPSMSTVLEMLLGEKDLNEENVTKPGMIFEFVEAKSAGKQKGKSEEKGNFLLAEGKQDESSSSETMSSFATMTFTAIYDRSN*	390

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g1656	389	Gene3D	Phosphorylase Kinase; domain 1	21	122	-	-
	Pvu11g1656	389	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	169	181	IPR008271	GO:0004672\|GO:0006468
	Pvu11g1656	389	CDD	STKc_IRAK	53	318	-	-
	Pvu11g1656	389	ProSiteProfiles	Protein kinase domain profile.	47	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu11g1656	389	PANTHER	RECEPTOR-LIKE KINASE	1	375	-	-
	Pvu11g1656	389	SUPERFAMILY	Protein kinase-like (PK-like)	26	318	IPR011009	-
	Pvu11g1656	389	Pfam	Protein kinase domain	50	259	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu11g1656	389	SMART	serkin_6	47	307	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu11g1656	389	Gene3D	Transferase(Phosphotransferase) domain 1	123	333	-	-
	Pvu11g1656	389	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	1	375	-	-
	Pvu11g1656	389	MobiDBLite	consensus disorder prediction	347	372	-	-
	Pvu11g1656	389	ProSitePatterns	Protein kinases ATP-binding region signature.	53	75	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g1656	Pvu-Chr11	41952782	41956693	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu11g1656	19	321	Receptor kinase-like Gene Family	AT1G53430	56.436	7.59e-109	340

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pvu11g1656		Pkinase	2.3e-48	CL0016