Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1653 ATGGATCTGACCAAGAAGCGCAAGCTTGATGAGAACGGTTTCGGTGATTCTGACCCGCTTAAACTCTCTCCCTCCGAGGCGCGTAAGCTCATCGAGCGCTTCACCCCGGAGCAGCTCCTCGACATCCTCCAGGACGCGGTGGCGCGCCACGCCGACGTGCTCGCCTCCGTGCGCGCCGTCGCGGACCCCGATGTGTCGCAGCGGAAACTTTTCGTACGCGGCCTCGGGTGGGACACTACCACCGACGGGCTACGCTCGCTTTTCTCCGCATACGGCGAGCTTGAGGAGGCTGTTGTAATCGTCGACAAGGCAACCGGCAAGTCCAAGGGCTACGGTTTCGTCACCTTCCGCCACGTGGACGGCGCGATCCTCGCCCTGCGAGAACCCAGCAAGCGCATCGACGGGCGAGTGACCGTCACGCAGCTGGCTGCCGCGGGAAACTCCCCGTCAAACGCTAACGCTGCTGATGTTGCGCTAAGGAAGATCTACGTGGCCAACGTGCCGCCGGACCTCCCGGCTGATAAGCTCCTCGCGCATTTTTCTGTGTATGGTGAGATCGAAGAGGGACCGTTAGGGTTTGATAAACAAACTGGAAAATCAAAAGGGTTTGCGCTTTTTGTTTACAAGACTCCTGAAGGGGCTCAAGCTGCGTTATTAGATCCTGTGAAAACTGTGGAAGGAAGGCAATTGAGTTGTAAATTGGCGATAACGGATGGGAAGCAGGGGAAGCGAGCCGGACCAGATTCGGGTCAGGCGCATGGGAATGTTCAGCACGGTCATGGGGATGGAGTGGGGGCTGGAATGGGGATGCCTCCTGCGGCAGGGTCTGGACCGGGCCAGTATGGCGGCCCGCAGTATGGAGGACCGGTTGCGTTGGGTTCGTATGGTGGTTTTGGTGGACAGCCTCCGTTGGGTAACCATAATCATCCTCTGAATTCGTCCAATCCCGTACCCGGTTCAATGGCCGGTGCTGGAGGATACGGTGCTGGGATGGGTGGGCCTTATGGTGGATATGGTGGGCCGGGCTCGACGGGCTTTGGTGCTGCAGGTGGGTTAGGAGGAGCTGTTGGAGGTGCCGGTGTTGGTGGTGCGCTTGGAGGAGCTGGTGGGGGTCTTAGTGGTGGTGCTGGTTCTTTGTATAGATTGCCGGGTTCTGGGGCTATGCCTGCAAGCGGTGGAGGATATCCGGAGGGTGGTCATTATGGTTTATCAGCTTCGGCTGGATACCAGAACCAGCATCATCCTCCTTCTGGTGCTTCTCCTGTGCCTAGAGTTCCACCTGGTTCGATGTATCCGAATGTGCCTCCGTACTACTAA 1317 0.5839 MDLTKKRKLDENGFGDSDPLKLSPSEARKLIERFTPEQLLDILQDAVARHADVLASVRAVADPDVSQRKLFVRGLGWDTTTDGLRSLFSAYGELEEAVVIVDKATGKSKGYGFVTFRHVDGAILALREPSKRIDGRVTVTQLAAAGNSPSNANAADVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALLDPVKTVEGRQLSCKLAITDGKQGKRAGPDSGQAHGNVQHGHGDGVGAGMGMPPAAGSGPGQYGGPQYGGPVALGSYGGFGGQPPLGNHNHPLNSSNPVPGSMAGAGGYGAGMGGPYGGYGGPGSTGFGAAGGLGGAVGGAGVGGALGGAGGGLSGGAGSLYRLPGSGAMPASGGGYPEGGHYGLSASAGYQNQHHPPSGASPVPRVPPGSMYPNVPPYY* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1653 438 PANTHER GEO13361P1-RELATED 1 403 - -
Pvu11g1653 438 SUPERFAMILY RNA-binding domain, RBD 148 267 IPR035979 GO:0003676
Pvu11g1653 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 145 IPR000504 GO:0003723
Pvu11g1653 438 MobiDBLite consensus disorder prediction 1 15 - -
Pvu11g1653 438 MobiDBLite consensus disorder prediction 419 438 - -
Pvu11g1653 438 CDD RRM_RBM24_RBM38_like 68 143 - -
Pvu11g1653 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 219 IPR000504 GO:0003723
Pvu11g1653 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 137 IPR000504 GO:0003723
Pvu11g1653 438 Gene3D - 44 149 IPR012677 -
Pvu11g1653 438 MobiDBLite consensus disorder prediction 405 438 - -
Pvu11g1653 438 CDD RRM_RBM24_RBM38_like 160 235 - -
Pvu11g1653 438 PANTHER UBP1-ASSOCIATED PROTEIN 2C 1 403 - -
Pvu11g1653 438 MobiDBLite consensus disorder prediction 1 21 - -
Pvu11g1653 438 SUPERFAMILY RNA-binding domain, RBD 57 144 IPR035979 GO:0003676
Pvu11g1653 438 MobiDBLite consensus disorder prediction 238 317 - -
Pvu11g1653 438 Gene3D - 150 271 IPR012677 -
Pvu11g1653 438 SMART rrm1_1 69 141 IPR000504 GO:0003723
Pvu11g1653 438 SMART rrm1_1 161 233 IPR000504 GO:0003723
Pvu11g1653 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1653 Pvu-Chr11 41909638 41912356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1653 156 235 C2H2 Transcription Factor Family AT2G19380 40.000 6.62e-11 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1653 11 41909638 41912356 Pvu11g1653 11 41909638 41912356 ECH