Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1607 ATGAACGAGAAGGCCAACGTCTCCAAAGAGCTCAACGCCAAACACAAGAAGATATTGGAAGGACTTCTTAAACTACAAGAGAATAAGGAATGTGCTGACTGCAAAGCCAAAGGCCCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCTGGAATACATAGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCGGCAACTTTGGACACCTGGCTTCCAGAGCAGGTTGCATTCATTCAATCGATGGGAAATGAGAAGGCAAACAGTTACTGGGAAGCAGAATTACCCCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGCAAGGAATGAGAAACCAAAATCACCTTCTAGTTTTCGAGAAGAGAAAAGTCCTTCACATTGGCAAAGGCCTGTGGAAAGGGTTGGCCATAGTTATGCAGCTGTGTCTGAGAATAATTTTGAGGATAGGAAGAAAATCCAACCTTCAAATGCTATTCCTGCTACAAGAATTTGTGTTCCTGCTCCTCCCAAAGGGCCTGACCTG 573 0.4311 MNEKANVSKELNAKHKKILEGLLKLQENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVARNEKPKSPSSFREEKSPSHWQRPVERVGHSYAAVSENNFEDRKKIQPSNAIPATRICVPAPPKGPDL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1607 191 MobiDBLite consensus disorder prediction 126 148 - -
Pvu11g1607 191 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Pvu11g1607 191 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Pvu11g1607 191 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Pvu11g1607 191 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Pvu11g1607 191 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Pvu11g1607 191 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 189 IPR044520 GO:0005096
Pvu11g1607 191 CDD ArfGap 19 117 - -
Pvu11g1607 191 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Pvu11g1607 191 MobiDBLite consensus disorder prediction 126 146 - -
Pvu11g1607 191 PANTHER ARF GTPASE ACTIVATOR 1 189 - -
Pvu11g1607 191 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Pvu11g1607 191 SUPERFAMILY ArfGap/RecO-like zinc finger 15 125 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1607 Pvu-Chr11 40925274 40928159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1607 16 123 C2H2 Transcription Factor Family AT4G05330 47.414 2.21e-29 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1607 11 40925274 40928159 Pvu11g1607 11 40925274 40928159 ECH
Pvu6g1538 6 26094790 26097688 Pvu11g1607 11 40925274 40928159 ECH
Pvu5g1199 5 33530600 33533721 Pvu11g1607 11 40925274 40928159 ECH
Pvu11g1049 11 11097802 11100927 Pvu11g1607 11 40925274 40928159 ECH