Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1600 ATGGAATCCCCGGCTTCGAACGGATCGGTTTCGAAGCGTTCGCTGAGGAGGAAAGTGAATTTGAGGAGCTATGATGAGGATCTGATGGATGAGTTGTTTGAGAAGCAATTGGGGGGTGGCTTGAAGAAGAGGAGTAGGACCAAAGAGGATTTGGAGAAGGAGACTGAGACTGAGGCTATGATTGCGATGTCGCTTGGTTTCCCTATTGATGCTTTGCTTGAGGAGGAGGTTAGGGCTGGGGTTGTGAGGCAGTTGGGTGGGAAGGAGCAGAATGATTACATAGTGATAAGGAATCATATATTGGCTCTGTGGAGGAGGGGGAATGTGAGGTTGTGGTTGAGTAAAGGGATGATTAGGGAAACTGTGAGCAATGAGTATGAGCATTTGATTAATTCTGCATACGATTTCCTTTTGTATAATGGCTACATAAATTTTGGGGTTTCACCTGCATTTACTTCTCAATTGCCCGAGTCAAATGAGGGGACTGCTGTTGTTATTGGAGCTGGCCTGGCAGGGTTGGCAGCAGCGAGGCAGCTGTTGTCGTTCGGTTACAAGGTGGTGGTTTTGGAAGGCAGAAATCGGCCTGGTGGGCGAGTTTATACTCAGAAGGTAGGGCGTGAGGGAAAATTTTCTGCCATTGATGTTGGTGGGAGCATTATCACTGGCATTCATGCTAACCCTTTGGGAGTTCTGGCTCGACAACTTTCTATACCACTTCATAAAGTCAGAGATAATTGCCCTTTATATAAGCCAAATGGGGCACCGGTTGATACAGAAATGGATGCAAGCGTTGAATTTGTATTTAATAGGTTGCTTGACAAGGTTATGGAGCTGAGGCAAATTATGGGTGGGTTTGCAAGTGATACCTCACTTGGTTCGGTATTGGAGACTCTTAGGAAATTGTATAGCGTGACCAGAAGTACTGATGAGAGGCAGTTGCTTGATTGGCATCTTGCAAATTTGGAATACGCAAATGCTGGGTGCCTTTCAAATCTTTCGGCTGCCTATTGGGATCAGGATGATCCGTATGAGATGAGTGGTGATCACTGCTTTCTTGCTGGAGGGAATACGAGATTGATAAAAGCTCTATGTGAAGGAGTTCCTATTTTTTATGGAAAGACTGTGAATACTATCAGATATGGGAACGAGGGTGTTGAGGTCATTGCTGGGGACCAAGTCTTTCAAGCAGATATTGCCTTATGCACTGTGCCTCTTGGAGTTCTGAAAAAGAAGGCCATCAGTTTTGAACCTGAATTACCTGAAAGGAAACTGGCAGCAATTGAGAGGATGGGGTTTGGGCTGCTGAACAAAGTTGCTATGGTTTTTCCTCATGTATTTTGGGGGGAAGATCAAGACACATTTGGATGTCTCAATGAATATAGTCATCAACGTGGGGAGTTTTTCCTATTCTACTGTTACCACACAGTTTCCGGAGGCCCCGCGCTTGTTGCGCTGGTGGCTGGTGAAGCCGCCCAAGCCTTTGAATCCACAAATCCTTCCATTTTGCTCCATCGCGTTTTGACTGTTTTAAAAGGTATCACATTTATTTGA 1551 0.4539 MESPASNGSVSKRSLRRKVNLRSYDEDLMDELFEKQLGGGLKKRSRTKEDLEKETETEAMIAMSLGFPIDALLEEEVRAGVVRQLGGKEQNDYIVIRNHILALWRRGNVRLWLSKGMIRETVSNEYEHLINSAYDFLLYNGYINFGVSPAFTSQLPESNEGTAVVIGAGLAGLAAARQLLSFGYKVVVLEGRNRPGGRVYTQKVGREGKFSAIDVGGSIITGIHANPLGVLARQLSIPLHKVRDNCPLYKPNGAPVDTEMDASVEFVFNRLLDKVMELRQIMGGFASDTSLGSVLETLRKLYSVTRSTDERQLLDWHLANLEYANAGCLSNLSAAYWDQDDPYEMSGDHCFLAGGNTRLIKALCEGVPIFYGKTVNTIRYGNEGVEVIAGDQVFQADIALCTVPLGVLKKKAISFEPELPERKLAAIERMGFGLLNKVAMVFPHVFWGEDQDTFGCLNEYSHQRGEFFLFYCYHTVSGGPALVALVAGEAAQAFESTNPSILLHRVLTVLKGITFI* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1600 516 Gene3D - 164 429 IPR036188 -
Pvu11g1600 516 ProSiteProfiles SWIRM domain profile. 52 154 IPR007526 GO:0005515
Pvu11g1600 516 Pfam SWIRM domain 70 145 IPR007526 GO:0005515
Pvu11g1600 516 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 37 513 - -
Pvu11g1600 516 SUPERFAMILY FAD/NAD(P)-binding domain 162 450 IPR036188 -
Pvu11g1600 516 SUPERFAMILY FAD-linked reductases, C-terminal domain 431 513 - -
Pvu11g1600 516 Gene3D - 57 156 IPR036388 -
Pvu11g1600 516 Gene3D - 245 513 - -
Pvu11g1600 516 PANTHER FLAVIN MONOAMINE OXIDASE 37 513 - -
Pvu11g1600 516 SUPERFAMILY Homeodomain-like 54 157 IPR009057 -
Pvu11g1600 516 Pfam Flavin containing amine oxidoreductase 170 513 IPR002937 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1600 Pvu-Chr11 40803495 40805458 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Pvu11g1600 Amino_oxidase 1.5e-58 CL0063