Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1587 ATGTCAGATGATCAGTTTCAAGCGAGTGGAAACTGGTGGGAATCAGCAAGAAACGTGAGGTTTGAGAGTGGGGAAACACAGTCTTCTTCTTCGGGCCTAACCAACATGGGAAACTATGCTTGGCAGCATGACATGGCTAGGTCTTCTTCCATGGATAACTCTGCCTCAGGAGGTTCCTCTGTGGTTTTCCATGACCAGAAGCAGCTTCAAGTTCAGCCACACCATGACTCAACAGCCACAAATCCCACCAATGACCATCCCAACTTGCACATGATGGGCTTGGGCCTCTCGTCCCAAGCCATGGACTGGAATCAAGCATCTTTGCAGCTGCGAGGTGAGAAGGGTTCGGAGGGCAGTTTCAGGTCGATGTTGCAAGAGAATTTGAGCTCACCAGGCACCACTTTTCAGCAAGAAAGTGGGAATAACAATATTGCCTTGTCTCATCATCAACAAGTTCATTGGAGGCCAGAAAAGTTGTTCTCTGCGGAGTCATCAAGCAATGAATTCAAGAGGGGTTTCTCCTTGGACCAAACACAGTTCAGTCCTCAATACAGCTCTGGGGACAGCACTGTCACAAGCCAAGGTTTGCCTTGTACTTTTCAGATGGATTATGTGGGTAACCCTTCTTCAATATTGCAAGGACTTTTGGGACATGAGAACAATAACCAACAACCCCACCAAGGTGGTAGTGCTTCCTTTGAGAATCGTCCCATGAATTTTCCTTACTCGGCAACAACCTATGGATTAAGCTCAAACATTGAGTTAGTTCCTTCTTGGTCAAAGGTGCCTCAGTTCTTAAGAGCTTCACCGCCAAAACAACCACCCAATAACCAGTTGCATTTCACTAACAACGCTCCCTTTTGGAACGCTAATTCTGAGCCTTCTATGAAGGATGCTCGATCCAGCTTCATCCCCTCTTTGCAACCACCCTTTTCGCCATCAAATTTCGATGTTCAATCAAAGAATATATCTGAAGTTAGGGATTCGGGTGTGGTGAAGAAAAGTGGAAGTGAAACAGCACCAAAAAGGCCCAGAAACGAAAACCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTCTCTGAAGCCATTGAATATATCAAATTCCTCCATGAACAAGTCACCGTTTTAAGCACTCCCTATATGAAAACTGGTGCTCCCATACACCATCAGCAGAGTTCTGGTAAATCGAAGGAATGTGAGGGTCCAAAGCAAGATCTTAGAAGCCGAGGGCTATGTTTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCATGAACCCACAGTTGAATATTGGACACCAACATTTGGAGGAACTTACAGATAG 1401 0.4575 MSDDQFQASGNWWESARNVRFESGETQSSSSGLTNMGNYAWQHDMARSSSMDNSASGGSSVVFHDQKQLQVQPHHDSTATNPTNDHPNLHMMGLGLSSQAMDWNQASLQLRGEKGSEGSFRSMLQENLSSPGTTFQQESGNNNIALSHHQQVHWRPEKLFSAESSSNEFKRGFSLDQTQFSPQYSSGDSTVTSQGLPCTFQMDYVGNPSSILQGLLGHENNNQQPHQGGSASFENRPMNFPYSATTYGLSSNIELVPSWSKVPQFLRASPPKQPPNNQLHFTNNAPFWNANSEPSMKDARSSFIPSLQPPFSPSNFDVQSKNISEVRDSGVVKKSGSETAPKRPRNENPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKTGAPIHHQQSSGKSKECEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1587 466 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 455 - -
Pvu11g1587 466 CDD bHLH_AtbHLH_like 352 403 IPR045239 -
Pvu11g1587 466 SMART finulus 357 401 IPR011598 GO:0046983
Pvu11g1587 466 MobiDBLite consensus disorder prediction 323 354 - -
Pvu11g1587 466 Gene3D - 356 417 IPR036638 GO:0046983
Pvu11g1587 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Pvu11g1587 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 356 413 IPR036638 GO:0046983
Pvu11g1587 466 MobiDBLite consensus disorder prediction 217 236 - -
Pvu11g1587 466 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 8 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1587 Pvu-Chr11 40049833 40053912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1587 111 466 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.253 1.99e-79 250