Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1579 ATGATATGTTCAACAAACACAGTAACACATACAATTCCCTCAGTAAATGCACATATATTCAATCCAGTTATCACTGGAATCAATCACACTGCAATGACGATTTTCACTCTCGCACTTGGTATTTGCACCCTACTTTTTCTCCTTTCAAAAGCTTTCTCAACTGATACACTTACCCTCTCTCAATCTCTCCATGATGGCACCACCTTATCGTCCAAAGACGAAACTTTCGAACTGGGTTTCTTCTCCCTAAGAAACTCCACAAACCGTTACCTAGGAATCTGGTTCAAAAACATCCCAGTAAAAACCATTGTTTGGGTTGCAAACCGTGACCACCCTCTCAAAGACAACTCCACCAAGTTGACCATAACCAACGACGGAAACCTCCTCCTTCGCACCAACAACAGCACAGTTCACTGGTCAACAAACACAACAACAAAGCCTCTGAGACCACCCATTTTGCAACTCTTAAACACCGGGAACTTAATACTTCGCAACGATGATGACCACAGCAATAATGAAGAGAAGTTCTTGTGGCAAAGCTTTGACTACCCTTGTGACACATTGCTACCAGGAATGAAGCTTGGATGGAACAAAAAAACCGGTCTCAATCGAAGTATTACTGCGTGGAAGAACTGGGATGACCCTTCTGCTGGAAACTTCACATGGGGCATCACATTTGACAGCAACCCTGAAATGGTTCTTTGGAAGGGAACATCTAAGTACCATAGGAGTGGCCCTTGGAATGGTATCCGGTTCAGTGGTGCATTTGCTGGTTCAAATATGTTAACCACTCACCCTCTTTTCGTTTACGAATTGGTCAACAACAACGACGATGAAGTGTACTACTCATACAGATCCGTCAACAAGTCCCTGATCTCAATAGTTGTCATGAACCAAACCCTTTTCCGCCGCCAACGGATCATTTGGATCCCCGACAACGGAACTTGGAGGTTGTTCCAAACCGCTCCAAGAGATATCTGCGACACTTACAATCCATGTGGTTCTTATGCGAATTGCATGGTTGATTCATCACCTGTGTGCCAGTGTTTAGAAGGGTTTCAACCGAAGTCTTCAGAGACTGCGGACTTGTCACAAGGGTGTGTGAGAAGTGAACCGTGGAGGTGCAGGGTAGAGAGGAGAGATGGATTTAGAAAATTTGTTGGGTTGAAGTATCCTGATACGACACATTCATGGGTTAATAGAAGCATGACACTCGATGAATGCAAGGTAAAGTGTTGGGAAAATTGTTCGTGCACGGCTTATGCAAACTTGGATATAAGAGGAGCAGGAAGTGGGTGTTCTATTTGGTTCGGTGATCTTATTGATTTGAAGGTTGTTTCACAAAGTGGGCAATATCTGTATATTCGAATGGCAGATTCAAGGACAGATCCTAAAGATGCCCACAAGAAGAAGGCATTGTTGCTGATAGGTACCACCGTGGCTCCTACTGTTCTTGTCATTCTATTGGCAATCTTATACTATTACAGGAGAAAAAGAAAGTATGAAGAAGAAAACGTGTCAGTAGTAAAGAATGATAAAGTTGTTGGACAAGAAGATAGTATGGAACTACCGTTGTTTGATTTTGCTACATTAGTTAATGCTACCAACAACTTCTCAACTGACAACAAACTTGGGCAAGGTGGGTTTGGGCCTGTATACAAGGGTGTATTAGCAGATGGACAAGAAATTGCTGTTAAAAGGCTATCAAGGAGTTCAGGACAAGGATTAACAGAATTTAAGAATGAAGTTATATTGTGTGCCAAACTGCAACACCGAAATCTGGTTAAAGTTCTTGGTTGCTGCATTGAAGCAGAGGAGAAAATGCTTCTCTATGAATATATGCCCAACAGAAGTTTAGATTCATTTCTTTTTGATTCAACTAAAAGTGAGGTTTTGGACTGGTCTAAGCGCTTTCATATCTTATGTGCAACTGCTCGTGGACTTCTTTATCTTCATCAGGATTCTAGATTAAGAATAATACATAGAGATTTAAAAGCAAGTAATATTTTATTGGACAACAACTTGAATCCTAAAATTTCAGATTTTGGGTTAGCAAGAATGTGTGGAGGTGATCAAATTGAAGGAAATACTAACAGGATTGTAGGAACATATGGATACATGGCACCTGAATATGTTATCCATGGATTATTCTCCACAAAATCTGATGTGTTTAGTTTTGGCATATTATTGCTGGAAATCATTAGTGGAAAAAAGAACAGAGAAGTTACCTACCCACACCATAGTCATAATCTTATTGGGCATACATGGAAGTTGTGGAAAGAAGGCACACCAGAAAAATTGATTGATAAGTGTTTGGAGGATGCATGCATCTTATCAGAAGCAGTACGTTCCATTCACATCGGTCTTCTATGCCTTCAACGTCAACCTAATGATCGACCAAACATGTCCTCTGTGGTTGTTATGTTAAGTAGTGATAATGAATTACCAGAACCAAAGGAACCTGGTTTCTTGATAGATAGGATCATGAATGAAGAGCAATCAGAATTTAGAAGCCAAACTTCTTCAACCAATGAAGTAACCATTTCAATCCTGAATGCTAGATAA 2565 0.4058 MICSTNTVTHTIPSVNAHIFNPVITGINHTAMTIFTLALGICTLLFLLSKAFSTDTLTLSQSLHDGTTLSSKDETFELGFFSLRNSTNRYLGIWFKNIPVKTIVWVANRDHPLKDNSTKLTITNDGNLLLRTNNSTVHWSTNTTTKPLRPPILQLLNTGNLILRNDDDHSNNEEKFLWQSFDYPCDTLLPGMKLGWNKKTGLNRSITAWKNWDDPSAGNFTWGITFDSNPEMVLWKGTSKYHRSGPWNGIRFSGAFAGSNMLTTHPLFVYELVNNNDDEVYYSYRSVNKSLISIVVMNQTLFRRQRIIWIPDNGTWRLFQTAPRDICDTYNPCGSYANCMVDSSPVCQCLEGFQPKSSETADLSQGCVRSEPWRCRVERRDGFRKFVGLKYPDTTHSWVNRSMTLDECKVKCWENCSCTAYANLDIRGAGSGCSIWFGDLIDLKVVSQSGQYLYIRMADSRTDPKDAHKKKALLLIGTTVAPTVLVILLAILYYYRRKRKYEEENVSVVKNDKVVGQEDSMELPLFDFATLVNATNNFSTDNKLGQGGFGPVYKGVLADGQEIAVKRLSRSSGQGLTEFKNEVILCAKLQHRNLVKVLGCCIEAEEKMLLYEYMPNRSLDSFLFDSTKSEVLDWSKRFHILCATARGLLYLHQDSRLRIIHRDLKASNILLDNNLNPKISDFGLARMCGGDQIEGNTNRIVGTYGYMAPEYVIHGLFSTKSDVFSFGILLLEIISGKKNREVTYPHHSHNLIGHTWKLWKEGTPEKLIDKCLEDACILSEAVRSIHIGLLCLQRQPNDRPNMSSVVVMLSSDNELPEPKEPGFLIDRIMNEEQSEFRSQTSSTNEVTISILNAR* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1579 854 Pfam Protein tyrosine and serine/threonine kinase 540 808 IPR001245 GO:0004672|GO:0006468
Pvu11g1579 854 SUPERFAMILY Protein kinase-like (PK-like) 521 838 IPR011009 -
Pvu11g1579 854 SUPERFAMILY alpha-D-mannose-specific plant lectins 103 215 IPR036426 -
Pvu11g1579 854 Pfam D-mannose binding lectin 102 210 IPR001480 -
Pvu11g1579 854 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 62 848 - -
Pvu11g1579 854 Gene3D Transferase(Phosphotransferase) domain 1 614 820 - -
Pvu11g1579 854 CDD B_lectin 60 184 IPR001480 -
Pvu11g1579 854 Pfam PAN-like domain 375 443 IPR003609 -
Pvu11g1579 854 SMART blect_4 60 184 IPR001480 -
Pvu11g1579 854 Gene3D Hepatocyte Growth Factor 374 455 - -
Pvu11g1579 854 ProSiteProfiles PAN/Apple domain profile. 375 458 IPR003609 -
Pvu11g1579 854 ProSiteProfiles Bulb-type lectin domain profile. 54 176 IPR001480 -
Pvu11g1579 854 ProSiteProfiles EGF-like domain profile. 323 359 IPR000742 -
Pvu11g1579 854 Pfam Domain of unknown function (DUF3403) 810 854 IPR021820 GO:0004674
Pvu11g1579 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 659 671 IPR008271 GO:0004672|GO:0006468
Pvu11g1579 854 Gene3D Phosphorylase Kinase; domain 1 512 613 - -
Pvu11g1579 854 SMART ntp_6 378 457 IPR003609 -
Pvu11g1579 854 Gene3D - 50 181 IPR036426 -
Pvu11g1579 854 Pfam S-locus glycoprotein domain 243 357 IPR000858 GO:0048544
Pvu11g1579 854 SMART serkin_6 538 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1579 854 PIRSF SRK 27 854 IPR024171 GO:0004674
Pvu11g1579 854 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 62 848 - -
Pvu11g1579 854 CDD PAN_AP_plant 381 458 - -
Pvu11g1579 854 ProSiteProfiles Protein kinase domain profile. 538 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1579 854 CDD STKc_IRAK 544 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1579 Pvu-Chr11 39893899 39897526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1579 473 823 Receptor kinase-like Gene Family AT4G23230 53.977 1.76e-127 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu11g1579 PK_Tyr_Ser-Thr 3.5e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0911 5 24207273 24211263 Pvu11g1579 11 39893899 39897526 PCT