Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1578 ATGGCCATTCCACTACCATTCATCGTCGTAGCCAGTTTAGTTTTGCTCTCATCAAAAGTTTCCTCTGAAACCAACACCATCACTCAGTTTCAGCCACTTACCTATGGAACCAACTTGGTTTCTGAGGAAGGAACCTTCGAATTAGGTTTCTTCCGCCTAGGTACTTCCTCAAACCTCTACCTAGGAATCTGGTTCAAAAAAATCCCACAGAAAACCATTGTTTGGGTTGCCAACCGCAACAATCCAATCAATAACACCATCATCAACAGCAACAGCAACAACTCAACCGAGTTAACCTTAACCAAAGAAGGAAACCTGGTTCTTCTCAGCAGCAACAACACCGTTCACTGGTCAACAAATGCAACAGCAAAATCTGAATCGGTGAAGCCAGTAGCACGGCTTTTGGAAACAGGGAACTTTGTGGTAAGAGATGAAAAGGACAACAATTCTGAAAACTACTTGTGGCAAAGCTTTGACTATCCTTCGGACACACTTTTACCAGGAATGAAGCTAGGGTGGGAAGTAACAACGGGTCTCAACAGATACCTCACTTCTTGGAACAACTGGGAAGACCCATCTTCTGGTCATTTTTCTTATGGAGTTTCAAGAGGCAACATCCCCGAAATGCAACTTTGGAACGGTTCATCAGTGACCTACAGAAGTGGCCCTTGGAGTGGCTTTCGATTCAGCGCCACACCCGCATTGAAGCGTCGTTCATTGATGAATATCAACTTCGTTGACAACCCCATGGAGAGTTATTACCAAGTTTTCCCGCGAAATAGGTCGATGATTCTGAGAACGGTGGTTAACCAAACCATGAACGCTCTTCAGCGTTTCATTTGGGACGAAGAAACTCAAAACTGGAAGCTTGATTTAGTTATCCCCAGAGACGGTTTTTGCGGCTATAACTACTGTGGCTCATTCGGGTACTGTGCTGTGAAGGACAACTCTTCAGCCTGCGAGTGTTTACGAGGGTTTGAGCCAAAATCGGCTGAAAAGTGGAGTGAAGGGTGCGTGCAAAGAAGTGAAACTAGGTGCAGGGTGAAGAAGAAAGACGGGTTTGTTAAGGTTAGTAACATGAAGATTCCCGACACTAAAACATCGTGGATGAATCGAAGTCTAACGATTGAGGAATGCAAGGCTAAGTGTTGGGAAAACTGTTCTTGCACGGCTTATGCTAATTCGGATATCACTGAAAATGGAAGTGGTTATAGCGGTTGCATCCTCTGGTTCGGTGATCTATTGGATTTGAGATTTCTTCCAGATGCAGGGCAAGATCTATTTGTTAGAATGGATATCTCCAAAATTGAAGAAAATAAAGACAGTTCAAAGAAAGTGGTGATTGGGGTCACAAGCATAGTTTCTTCGATTGCTGCAGTGCTTCTAATATTCACATTCTTTTACCGGAGAAGAAAAGGCAAAGATACAAAAGCAAAAATAAACGAAAGTGAAGAAGGTGATCTTGAGCTACCTTTGTTTGATTTTGATACAATAGCATGTGCTACTAGTGACTTCTCAGATGACAACATGCTTGGCCAAGGTGGTTTTGGTCCTGTCTACAAAGGAACATTGGATGGAAAGAATATTGCTGTGAAAAGGCTATCTGATACATCTGCCCAAGGACTCAAGGAATTTAAAAATGAAGTTATATTTTGTTCTAAACTTCAACATCGGAATCTTGTCAAAGTTCTCGGATATTGCGTTGAAGAGCAAGAAAAATTACTCATTTATGAATACATGCCTAACAAAAGCTTAAACTTCTTTCTTTTTGATGATGATATGAATCCAAAGATTTCTGATTTTGGATTAGCTAAAGTGGGTAAAGGTGATCAAATTGAAGGGAATACGAGGAGAGTTGTTGGTACATATGGTTATATGGCTCCCGAATATGCAATTGGTGGAGTATTCTCTGTCAAATCTGATGTTTATAGCTTTGGTGTTTTATTGTTAGAGGTTTTAAGTGGAAAGAAAAATAAAGGATTTTCCTACTCAATCCACAGCTATAATCTTATTGAACATGCATGGAGGTGTTGGAAAGAGTGCATCCCAATTGAATTCATTGACACTTGTTTAAGGGACTCGTACATTCTATCTGAAGCCTTACGATGTATTCATATCGGTCTTTTATGTGTACAACATCAACCTAATGATAGACCGAATATGACAACTGTAGTTACAATGTTAACAAGTGAAACTACTTTACCACATCCAGAAAAGCCTGTTTTCTTAATGCAAAGGGTTTTAGTTGAGGAAGATGTTGGACAAAATATGTATTGTCCAACCAATGAAGTAACTATTTCTGAGGTGGAACCAAGATAA 2319 0.4049 MAIPLPFIVVASLVLLSSKVSSETNTITQFQPLTYGTNLVSEEGTFELGFFRLGTSSNLYLGIWFKKIPQKTIVWVANRNNPINNTIINSNSNNSTELTLTKEGNLVLLSSNNTVHWSTNATAKSESVKPVARLLETGNFVVRDEKDNNSENYLWQSFDYPSDTLLPGMKLGWEVTTGLNRYLTSWNNWEDPSSGHFSYGVSRGNIPEMQLWNGSSVTYRSGPWSGFRFSATPALKRRSLMNINFVDNPMESYYQVFPRNRSMILRTVVNQTMNALQRFIWDEETQNWKLDLVIPRDGFCGYNYCGSFGYCAVKDNSSACECLRGFEPKSAEKWSEGCVQRSETRCRVKKKDGFVKVSNMKIPDTKTSWMNRSLTIEECKAKCWENCSCTAYANSDITENGSGYSGCILWFGDLLDLRFLPDAGQDLFVRMDISKIEENKDSSKKVVIGVTSIVSSIAAVLLIFTFFYRRRKGKDTKAKINESEEGDLELPLFDFDTIACATSDFSDDNMLGQGGFGPVYKGTLDGKNIAVKRLSDTSAQGLKEFKNEVIFCSKLQHRNLVKVLGYCVEEQEKLLIYEYMPNKSLNFFLFDDDMNPKISDFGLAKVGKGDQIEGNTRRVVGTYGYMAPEYAIGGVFSVKSDVYSFGVLLLEVLSGKKNKGFSYSIHSYNLIEHAWRCWKECIPIEFIDTCLRDSYILSEALRCIHIGLLCVQHQPNDRPNMTTVVTMLTSETTLPHPEKPVFLMQRVLVEEDVGQNMYCPTNEVTISEVEPR* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1578 772 Pfam D-mannose binding lectin 72 186 IPR001480 -
Pvu11g1578 772 ProSiteProfiles Bulb-type lectin domain profile. 24 155 IPR001480 -
Pvu11g1578 772 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 192 IPR036426 -
Pvu11g1578 772 SMART ntp_6 349 431 IPR003609 -
Pvu11g1578 772 ProSiteProfiles PAN/Apple domain profile. 346 432 IPR003609 -
Pvu11g1578 772 Gene3D - 18 158 IPR036426 -
Pvu11g1578 772 Pfam PAN-like domain 346 417 IPR003609 -
Pvu11g1578 772 CDD B_lectin 31 161 IPR001480 -
Pvu11g1578 772 Pfam S-locus glycoprotein domain 219 330 IPR000858 GO:0048544
Pvu11g1578 772 SUPERFAMILY Protein kinase-like (PK-like) 490 749 IPR011009 -
Pvu11g1578 772 CDD PAN_AP_plant 352 430 - -
Pvu11g1578 772 ProSiteProfiles Protein kinase domain profile. 505 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1578 772 Gene3D Transferase(Phosphotransferase) domain 1 583 727 - -
Pvu11g1578 772 SMART blect_4 30 161 IPR001480 -
Pvu11g1578 772 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 591 770 - -
Pvu11g1578 772 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 591 - -
Pvu11g1578 772 PIRSF SRK 589 772 IPR024171 GO:0004674
Pvu11g1578 772 PIRSF SRK 1 593 IPR024171 GO:0004674
Pvu11g1578 772 Gene3D Phosphorylase Kinase; domain 1 466 579 - -
Pvu11g1578 772 Pfam Protein tyrosine and serine/threonine kinase 509 591 IPR001245 GO:0004672|GO:0006468
Pvu11g1578 772 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 591 770 - -
Pvu11g1578 772 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 14 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1578 Pvu-Chr11 39872170 39876489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1578 470 772 Receptor kinase-like Gene Family AT4G11530 44.475 5.53e-91 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu11g1578 B_lectin 7.9e-36 No_clan