Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1292 ATGGTCGCCAAGGACAAAACGGTCATCAAGAATAAGAAGCCAAACAATGTCGCCGACGAGGTCCATTACCGCGGCGTCCGCAAGCGTCCCTGGGGTCGCTACGCCGCCGAGATCCGCGACCCTGGCAAGAAATCCCGCGTCTGGCTCGGGACTTTCGACACCGCGGAGGAAGCCGCCAGAGCCTACGATGCCGCCGCACGTAACTTTCGCGGCCCCAAAGCCAAAACCAACTTCCCCCCTCCCCCCGACACCGCCAACAACAACAAAAACGACCTTGACAACAACAAAAACAAAACTAGCAGCAGCAGCAGCCCTAGTCAGAGCAGCACCGTCGAGTCCGCAGCCCCGGAGCGTGACGTCACGCGCCGCCCTGTCTCTGCCCTCATCGACCGCTTCCCCTTCCTCCCGATCCAGCAGCAGCTACTCGTGACACCCGTCACTGCCGTGCGTCCGGTTTTTCTCCTCGACCGGGCTCATTACCTCACCCACCAATTCCCTTTTCGGTTCGAACCGGCCCCGGTTCAGAGTGACTCAGATTCCTCCTCCGTTGTTGATTGCCTATCCAAAAGAGAACTCAATCTCGATCTTAACCTGGCTCCTCCTATGGATTATTAA 615 0.5837 MVAKDKTVIKNKKPNNVADEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARNFRGPKAKTNFPPPPDTANNNKNDLDNNKNKTSSSSSPSQSSTVESAAPERDVTRRPVSALIDRFPFLPIQQQLLVTPVTAVRPVFLLDRAHYLTHQFPFRFEPAPVQSDSDSSSVVDCLSKRELNLDLNLAPPMDY* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1292 204 SUPERFAMILY DNA-binding domain 22 79 IPR016177 GO:0003677
Pvu11g1292 204 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Pvu11g1292 204 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Pvu11g1292 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 128 - -
Pvu11g1292 204 MobiDBLite consensus disorder prediction 66 122 - -
Pvu11g1292 204 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Pvu11g1292 204 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Pvu11g1292 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 128 - -
Pvu11g1292 204 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Pvu11g1292 204 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Pvu11g1292 204 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Pvu11g1292 204 MobiDBLite consensus disorder prediction 80 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1292 Pvu-Chr11 26734318 26735830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1292 20 202 AP2-EREBP Transcription Factor Family AT5G44210 47.872 4.74e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu11g1292 AP2 5.4e-16 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1292 11 26734318 26735830 Pvu11g1292 11 26734318 26735830 ECH
Pvu6g1900 6 29213340 29215073 Pvu11g1292 11 26734318 26735830 ECH
Pvu5g0772 5 13295710 13296859 Pvu11g1292 11 26734318 26735830 ECH
Pvu11g1689 11 42720583 42721619 Pvu11g1292 11 26734318 26735830 ECH