Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1049 ATGGTTAGAGGTGGTGGACTCTCCATGGATTCAGATCCAATTGGGAGCTTCTTCCTCCACAAGCCTATTGTTCTCAACTCTTTCCCTGAAGACACAAACCACCCCAAGTGGAAACTTAGTCCCCACAACAACATGGAAGCCACTGTTAGCACCAAAGACACCATCCCCTTCCAAGTCAACCTTAGCTGTTCTCCAAACAATCATGACTCTTCCCCATCATCCCTCCACAACAGAACCGAGATGGACTTCTTCTCCGACAACAACAAGAAGGAGCACAACGTTTCCGCTTCTGCCTCTAATCATCATCATTCCACCACTCCACCTACGTTGGAATTCAAAGTGAACACTGGTCTGAATCTTCTTACTGCCAACACTAGCAGTGATCAATCTATGGTGGATGATGAGATATCACCCAATTCAGAAGACAGAAGAGCTAAGAATGAGGTTGCTGCTCTTCAAGCTGAGCTTGAGAGAATGAAGAGGGAGAATCAAAAGTTGAGGAACACGCTTGATCAGGTTAACGTCAATTACGATGCACTTCAGATGCATTTTATGAATTTGATGCAGCAGCAGAAGGCCGAGGAAGCTGAAGAACAAGAAGTGATTGGTGGAAAGTTAGAAGAGAAGAAGCAAGGTGAGAGTAGTGGGGTATTGGTGCCAAGACAGTTCATGGATCTTGGATTGGCTACGAATGCTGACACTGACGAACCCTCTTCTTCATCAGGGGGAAGAAGTCAAGATCGATCAGGATCACCCCACGCAGAAGTGGCTTCGAAGGAATTAGGGACCGGTAAGAGTGAGATTGTTAATGACGAAGGGTATGACCAAGAGAAGAAGGAATATGGTAGAGGGGTTGAAAGTGAGGATAGTCCTTCAGGACATGCTTTTTCTGGTGATAAAGTTCCAAGGTTTAGTCCTCAAAAGAGTAACGTTGAACAGGCTGAGGCAACCATGAGGAAGGCAAGAGTTTCCGTTAGAGCTCGATCAGAAGCACCCATGATCACTGATGGTTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTATAGGTGTACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTGCAAAGGTGTGCTGAAGACCGAACAGTCCTCATCACAACCTATGAAGGCAATCACAACCATCCTTTGCCTCCAGCAGCTATGGCAATGGCACAAACCACTTCCTCAGCAGCAAGAATGCTTCTTTCTGGGTCAATGTCTAGTGCTGACAGCCTAATGAATGCAAACTTACTGACAAGGACACTTCTCCCTTGCTCTTCAAGCATGGCTACTATCTCAGCATCTGCTCCATTCCCAACTGTTACATTGGACCTGACACAATCTCCAAACCCTCTACAGCTTCCAAGGCACCCAAACCAGTTACAAATTCCCCTCCAAGGTGTCCCTCAGAATTTTGCAAACTCCCCAGCCTCTTTAATGCCTCAGATATTTGGACAAGCACTCTACAATCAATCAAAGTTTTCTGGTCTTCAAATGTCACATGATGCAGACCCTTCACAATTTGGTAACCACCCTCAGCAGGTACCGCCACACCTTACTGACACAGTTAGTGCTGCCATTGCTGCTGATCCAAACTTCACTGCAGCTTTGGCTGCAGCAATCACTTCCATTATTGGTGGTGCTCAGCAACACAACACCAACAGCAACAACAGTAATAATAGTAACAACAATGGCAACATGACAGCCAGCAACAGCACTGGCAATGGCAACATCACAAGTAGCAACAACAGCAACGGAAAGCAATAA 1800 0.4617 MVRGGGLSMDSDPIGSFFLHKPIVLNSFPEDTNHPKWKLSPHNNMEATVSTKDTIPFQVNLSCSPNNHDSSPSSLHNRTEMDFFSDNNKKEHNVSASASNHHHSTTPPTLEFKVNTGLNLLTANTSSDQSMVDDEISPNSEDRRAKNEVAALQAELERMKRENQKLRNTLDQVNVNYDALQMHFMNLMQQQKAEEAEEQEVIGGKLEEKKQGESSGVLVPRQFMDLGLATNADTDEPSSSSGGRSQDRSGSPHAEVASKELGTGKSEIVNDEGYDQEKKEYGRGVESEDSPSGHAFSGDKVPRFSPQKSNVEQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADSLMNANLLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQLPRHPNQLQIPLQGVPQNFANSPASLMPQIFGQALYNQSKFSGLQMSHDADPSQFGNHPQQVPPHLTDTVSAAIAADPNFTAALAAAITSIIGGAQQHNTNSNNSNNSNNNGNMTASNSTGNGNITSSNNSNGKQ* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1049 599 Gene3D WRKY domain 319 396 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu11g1049 599 MobiDBLite consensus disorder prediction 232 252 - -
Pvu11g1049 599 SUPERFAMILY WRKY DNA-binding domain 327 395 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu11g1049 599 MobiDBLite consensus disorder prediction 230 315 - -
Pvu11g1049 599 MobiDBLite consensus disorder prediction 508 528 - -
Pvu11g1049 599 Pfam WRKY DNA -binding domain 336 393 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu11g1049 599 MobiDBLite consensus disorder prediction 562 599 - -
Pvu11g1049 599 MobiDBLite consensus disorder prediction 195 214 - -
Pvu11g1049 599 SMART WRKY_cls 334 394 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu11g1049 599 PANTHER OS05G0567200 PROTEIN 53 577 - -
Pvu11g1049 599 MobiDBLite consensus disorder prediction 195 216 - -
Pvu11g1049 599 ProSiteProfiles WRKY domain profile. 329 395 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu11g1049 599 Coils Coil 142 183 - -
Pvu11g1049 599 MobiDBLite consensus disorder prediction 123 145 - -
Pvu11g1049 599 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 53 577 IPR044810 GO:0003700
Pvu11g1049 599 MobiDBLite consensus disorder prediction 270 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1049 Pvu-Chr11 11097802 11100927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1049 80 570 WRKY Transcription Factor Family AT1G62300 51.378 8.62e-136 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu11g1049 WRKY 4.5e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1049 11 11097802 11100927 Pvu6g1538 6 26094790 26097688 ECH
Pvu11g1049 11 11097802 11100927 Pvu11g1049 11 11097802 11100927 ECH
Pvu11g1049 11 11097802 11100927 Pvu11g1607 11 40925274 40928159 ECH
Pvu5g1199 5 33530600 33533721 Pvu11g1049 11 11097802 11100927 PCT