Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0649 ATGGAGCACCCAAACTTCTTTGGTGAAGACGAGGGCATAGCCCATCTCACAGACTCGCTTGCTTTTCCAACCATGGATCCTTCTTCCAGAGACCCTTCGCTGGAAGACAACGACTTCTCGGAAACTGCCAAGTTCATCAGCCAGATCCTCATGGAAGAGAACGTCGAACACAAGCCATTCTACGACTCACTCACCTTGCAAGTTACCGAGAAATCCTTCTACGACGCTCTCGCCGGTAACCTACTTCCTTCCTCCAATCAACACCCCCTTGCTTTCAGTCCCGAAGCTGAAACCACCACCACCACCACCACCGCTAGCAGCAGTAGCAGCAGCAACAACAGTAACAACAATTTTTCAGATGAAAATTCTGGTGAGTTGAAGCTTCCTTCTCCAGATTCTGTTTTTAAGTTTAACTCCCGCCCGCTTTCTCAACCATCTCCTTCAATTACCGCCAATCATGGGCTCCAAGATTTGGACTTTTCTATTGCCAAACTCTTGTCACAGAATATTTTCAATGATGTTGACTCCGTTTCCCAGTTCAGGCGAGGCTTGGAGGAAGCTAGCAAGTTTCTTCCTCCGGGACCTAACCTCGTGACTGGTCTAGATTCAAATGGAGAACAGGGGTTCAATAAGTTTGGAGAGACTTCGTATGGGTTGAGGAGTGGGAAAAATCACAAGCGGGATGAGAGATACGCTATAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGAGAAGTAACAAGCAGTCAGCACTTTCCCATGCCGATGAGAGTGACTTGTCAGATGCTTTTGATCGGGTGTTGCTTCATGAAGGAAACATGTGTAGCGAAATCAGTTCTTTGCCAGGTGGAGCAGTGAAGGTTGATGAACCAGATGGAGGGAAGAGCCGTTCAAGGAAACCAGGGAGGAACAAGGAAACAGTTGATTTGAGGAATCTTTTGTTGATGTGCTCACAATCTGTGTATGCCAATGACAACAGGACTGCCAATGAATTGCTAAAGCAGATTAGGCAACACTCTTCTCCCTTTGGGGATGCATCACAGAGGTTGGCTCATTACTTTGCCAATGCCCTTGAGGCACGCTTGGTTGGGGATGGTACTGTTGCACAAGGAACTTATTCTTTTCTGACCTCTAAGAGGTTCTCTGCTGCTGAGTTTCTCAAGGCATACCAGGTTTTTCTTTCCGCCTCCCCTTTCAAGAAGTTTACATATTTCTTTGCGAATAAAATGATTATGAAAGCAGCTGCAAAGGCAGAAACCATCCATATTATTGATTTTGGCATCCTATATGGTTTCCACTGGCCAATTCTTATTAAGTTTTTATCAAATAGAGAGGGTGGTCCTCCCAAACTGAGGATCACAGGGATAGAGTTTCCCCAACCTGGCTTTCGCCCCACAGAAAGAATTGAGGAGACTGGTTCCCGTCTGGCTAACTACTGTAAGCGTTACAATGTTCCCTTTGAGTACAATGCCATAGCATCGAGGAATTGGGAAACAATTCAAGTTGAAGCCCTTAAAATTCAGAGCAATGAGCTAGTTGCTGTCAATTGTCATATGAGGTTTGAGAATTTACTGGATGAGTCTATTGAAGTGAACAGTCCTAGAAATGCAGTCTTGCAATTGATCAGGAAGATAAATCCAGATATTTTTACTCATTCCATCACTAATGGATCATATAATGCCCCCTTCTTTGCCACAAGGTTTAGGGAGGCTTTGTTTCATTATTCTGCTATTTATGATATGTGTGACACTGTCATACCTCGTGAAAACGAATGGAGGTTGATGATTGAGAGAGAGCTTCTGGGCCGGGAGGCTATGAATGTTATAGCATGCGAAGGTTCTGAGAGACTTGAGAGGCCCGAGACATACAAACAGTGGCAGGCTAGGAATACAAGGGCTGGTTTCAAGCAGCTCCCATTGAATAAGGAGTTGATGGCCAAATTTAGGACCAAGTTAAAGGAATGGTACCACAGAGATTTTGTCTTTGATGAAGATAACAATTGGATGCTTCAAGGTTGGAAGGGCCGCATTTTGTATGCTTCCACTTGTTGGGTGCCGGCATAA 2061 0.4483 MEHPNFFGEDEGIAHLTDSLAFPTMDPSSRDPSLEDNDFSETAKFISQILMEENVEHKPFYDSLTLQVTEKSFYDALAGNLLPSSNQHPLAFSPEAETTTTTTTASSSSSSNNSNNNFSDENSGELKLPSPDSVFKFNSRPLSQPSPSITANHGLQDLDFSIAKLLSQNIFNDVDSVSQFRRGLEEASKFLPPGPNLVTGLDSNGEQGFNKFGETSYGLRSGKNHKRDERYAIEEEEEEEEEGRSNKQSALSHADESDLSDAFDRVLLHEGNMCSEISSLPGGAVKVDEPDGGKSRSRKPGRNKETVDLRNLLLMCSQSVYANDNRTANELLKQIRQHSSPFGDASQRLAHYFANALEARLVGDGTVAQGTYSFLTSKRFSAAEFLKAYQVFLSASPFKKFTYFFANKMIMKAAAKAETIHIIDFGILYGFHWPILIKFLSNREGGPPKLRITGIEFPQPGFRPTERIEETGSRLANYCKRYNVPFEYNAIASRNWETIQVEALKIQSNELVAVNCHMRFENLLDESIEVNSPRNAVLQLIRKINPDIFTHSITNGSYNAPFFATRFREALFHYSAIYDMCDTVIPRENEWRLMIERELLGREAMNVIACEGSERLERPETYKQWQARNTRAGFKQLPLNKELMAKFRTKLKEWYHRDFVFDEDNNWMLQGWKGRILYASTCWVPA* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0649 686 MobiDBLite consensus disorder prediction 278 303 - -
Pvu11g0649 686 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 21 685 IPR005202 -
Pvu11g0649 686 ProSiteProfiles GRAS family profile. 300 684 IPR005202 -
Pvu11g0649 686 MobiDBLite consensus disorder prediction 88 126 - -
Pvu11g0649 686 MobiDBLite consensus disorder prediction 289 303 - -
Pvu11g0649 686 MobiDBLite consensus disorder prediction 88 150 - -
Pvu11g0649 686 MobiDBLite consensus disorder prediction 136 150 - -
Pvu11g0649 686 MobiDBLite consensus disorder prediction 214 257 - -
Pvu11g0649 686 Pfam GRAS domain family 309 683 IPR005202 -
Pvu11g0649 686 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 21 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0649 Pvu-Chr11 5479282 5481988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0649 44 686 GRAS Transcription Factor Family AT1G07530 49.573 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pvu11g0649 GRAS 6.4e-116 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1498 5 37361147 37363303 Pvu11g0649 11 5479282 5481988 PCT
Pvu11g0649 11 5479282 5481988 Pvu5g1497 5 37349336 37351708 PCT