Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0648 ATGGAGCACAACTTTCCCAGAGTTGACCTGTTTGATGAAGAGGAGAGCTTATCATACCTCTCAGACTCACTTGGTTTTGCAACAATGGATCCTCCACTGGAAGAGAACGACTTCTCAGAAACTGCCAAGTTCATAAGCCAGATCCTCATGGAAGAGAACGTTCAACAAAATCCATTCTATGACTCGCTCACCTTGCAGGTTACCGAGAAGTCCTTCTATGATACTCTCATTGGTAACATTTCCCCTAATCAACACGCCCTTGTTCTCAGCCCCCAAGTTGAAACCACCACCACCACCAGCAATAACTACAACAGCAGTTTTTTAGATGAAAATTTTCCTTCCCCAGATTCTGTTTCTGCTTCTGCTTCTGCTTTTCAGTTTAACCCCCACATCCTTTCTCAGTCACCTTCATTTAGTCATGGATTCTCAGATTTGGATTCTTCTATTGCCAAACTCTTGGCACAAAATATGTTCAATGATGCTGATTCTGTTTCCCAGTTTAGGAGAGGGTTAGAGGAAGCTACCAAGTTTCTTCCTTCTGGCCCTAAGCTTGTAACTGGTCTGCATTCAAACGGGGAGGAGCAGGTCAATACGTTTGGAGATAATTCCTTCGGATGGGAGGGAAGGAAGAATCACGAGCGGCAAGAGATAGAAGAAGAAGAAGAAGGGAGAAGGAGTAAGCAATCGGCACTTAGCCTTGTTGATGAGAGTGACATTTCAGATGCTATTGATCGGGTGTTTCTAAGTGTGGAAAACGTGGGTAGTGAACAGAATTCCTTGCAGAATGGAGCAGTGAAAGGTGAGGAGCGAGATGGAGGGAAGGGACGATCAAAGAAACAAGGGACGAAGAAGGAAAGTGTGGATTTGAGGAATGTTCTGCTGATGTGTGCACAATCTGTATATGCCAATGACAACAGAGCTGCCACTGAATTACTAAAGCAGATTAGGCAACACTCTTCTCCCTTTGGGGATGCATCACAGAGGGTAGCTCACTATTTCGCCAATGGTCTTGAAGCACGGTTGGTTGGGGCTGGTTCAGGCGCTCATGAAATATTTTCTTTTCTGAACTCTAAGAGGATTACTGCTGCTGAGTTCCTGAGGGCATACCAACTTTTTCTATCTTCCACCCCTTTCAAGAAGTTTACATATTTCTTTGCAAATAAAATGATTATGGAAGCAGCTGCAAAATCAGAAACCGTCCATATTATTGATTTTGGCATCCTATACGGTTTCCAGTGGCCAATTCTTATAAAGTTTTTATCAAACAGAGAGGGTGGTCCTCCCAAGCTGAGGATCACAGGGATAGAGTTTCCCCAACCAGGCTTTCGTCCACTGAAAAAATTGAGGAGACTGGTCACCGTCTTGCTAGCTATT 1374 0.441 MEHNFPRVDLFDEEESLSYLSDSLGFATMDPPLEENDFSETAKFISQILMEENVQQNPFYDSLTLQVTEKSFYDTLIGNISPNQHALVLSPQVETTTTTSNNYNSSFLDENFPSPDSVSASASAFQFNPHILSQSPSFSHGFSDLDSSIAKLLAQNMFNDADSVSQFRRGLEEATKFLPSGPKLVTGLHSNGEEQVNTFGDNSFGWEGRKNHERQEIEEEEEGRRSKQSALSLVDESDISDAIDRVFLSVENVGSEQNSLQNGAVKGEERDGGKGRSKKQGTKKESVDLRNVLLMCAQSVYANDNRAATELLKQIRQHSSPFGDASQRVAHYFANGLEARLVGAGSGAHEIFSFLNSKRITAAEFLRAYQLFLSSTPFKKFTYFFANKMIMEAAAKSETVHIIDFGILYGFQWPILIKFLSNREGGPPKLRITGIEFPQPGFRPLKKLRRLVTVLLAI 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0648 458 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 28 448 - -
Pvu11g0648 458 MobiDBLite consensus disorder prediction 267 284 - -
Pvu11g0648 458 ProSiteProfiles GRAS family profile. 280 458 IPR005202 -
Pvu11g0648 458 MobiDBLite consensus disorder prediction 206 231 - -
Pvu11g0648 458 MobiDBLite consensus disorder prediction 193 232 - -
Pvu11g0648 458 MobiDBLite consensus disorder prediction 258 284 - -
Pvu11g0648 458 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 28 448 IPR005202 -
Pvu11g0648 458 Pfam GRAS domain family 289 444 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0648 Pvu-Chr11 5473805 5475178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0648 18 444 GRAS Transcription Factor Family AT2G29060 40.570 2.66e-81 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pvu11g0648 GRAS 1.1e-47 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0648 11 5473805 5475178 Pvu11g0648 11 5473805 5475178 ECH
Pvu11g0648 11 5473805 5475178 Pvu5g1498 5 37361147 37363303 PCT