Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02496 ATGAAACCAAACTTTGATCTTGAAGTGGAGGCATGTGCAGAATATGAATCTGAGGTTAGCAGCCAGGTTGCTTCCAATGTATCTATTCAAGAAACCTCTACAGGTCCTTGTAGTGACAGCCTCACTAACATTTCCAACATCACAAATCCAATAGGGCTTCATCCTAATTCAGATACTATTTCACTTGACTTATCTCTCAACTTCAAGAATAGTGAGCCAGGGGGAAGAGATTCAATAGGATTCTCATTCTCAAGCACCAGTGAGAGCAGCAATGAACCTGCCTCTCAAACTACAGCAGCAACCATTCCACGAGTCTTCTCTTGCAATTACTGCCAGCGCAAGTTTTTCAGTTCTCAGGCACTTGGTGGACACCAGAATGCACACAAGAGAGAAAGAACATTAGCAAAGAGGGCTATGAGAATGGGATTTTACTCTGAAAGGTATGCCAATCTACCATCTCTCCCTCTACATGGTTCTTTCAGGTCCTTAGGCATAAAGGCACACTCTTCACTTCACCATGGTTTCTCACCAACAATGAGGCCTCCTGAGATAAAAAACAATGCAAGATTTGATCAAGGGTATCTTGGTCTCCCAATATTCTTGGAGGATGATGAATCAGATTTGTTGTGGCCTGGTAGTTTTCGGCAGGTAGCTGAGGCAGGTGATAGTCATCAGAATTTCATACTGACTGGAAGTTCAAATTTGAGTTTTTCTGGGGTGAATGAGAACCCACCTGTAGACATTGAGAACGCAACACCAGATTTGACTTTGAAACTATGA 780 0.4269 MKPNFDLEVEACAEYESEVSSQVASNVSIQETSTGPCSDSLTNISNITNPIGLHPNSDTISLDLSLNFKNSEPGGRDSIGFSFSSTSESSNEPASQTTAATIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFYSERYANLPSLPLHGSFRSLGIKAHSSLHHGFSPTMRPPEIKNNARFDQGYLGLPIFLEDDESDLLWPGSFRQVAEAGDSHQNFILTGSSNLSFSGVNENPPVDIENATPDLTLKL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02496 259 MobiDBLite consensus disorder prediction 77 98 - -
Pumo9g02496 259 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Pumo9g02496 259 Gene3D Classic Zinc Finger 84 150 - -
Pumo9g02496 259 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 56 180 IPR044246 GO:0009788
Pumo9g02496 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Pumo9g02496 259 FunFam Zinc finger protein 2 83 151 - -
Pumo9g02496 259 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02496 Pumo-Chr9 59637323 59640470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02496 88 259 C2H2 Transcription Factor Family AT1G66140 52.020 1.95e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo9g02496 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02496 9 59637323 59640470 Pumo9g02496 9 59637323 59640470 ECH