Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01816 ATGGACGCCGCCACCAACTCCAGCGAAACCCACCCTAGTTCGGAGTTCCAAATGACTGGGGCATCCGAGGATCCGAATCGAAGCGGGTCGGGTCAGAATTCGACGGCGAGGTACAAGCTGATGTCGCCGGCCAAGCTTCCGATCTCGAGGTCGCCGTGCATCACGATTCCTCCGGGGCTCAGTCCGACGTCGTTTCTGGAATCCCCTGTTCTTCTTTCCAACATGAAGGTGGAGCCTTCACCAACTACAGGGTCCCTCCGTAAGCTCCAACAAACAGTACATGGTTCTATGGCTTCTGCTGCCTCTTCTACATTTCCAGTAACCACTGCCTGCTTCAATACCAATACTGTTGATGACAGAAAATCAAGCTTCTTTGAGTTTAAACCACTCAATAGATCGAATATGGTTCCTGCAGACTTCAACAACCATGTAAGTAAACAATCTACTCAAGTAGAAGGTCCAGGAAAAGCTCAATCATTTGCTTCCTCACCATTAGTTGAAAGTGAGATAGCAGTTCCTTCTAATGAATTAAGCCTATCATCACCTGTACAAATGGTTAGTTCTAGTGCTAGTGCTCCTGTTGATGTTGATTTGGATGACAATAACCACAAAGGCAACACAGCTACTGGGCTTCAAGCATCACATGTTGAGATTAGAGGCAGTGGACTTTCAGTTGCAGCTGAGAAAACATCGGATGATGGATACAATTGGCGAAAATACGGGCAAAAGCTTGTTAAAGGAAGTGAATTTCCTCGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGACGGTCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCTGCCGATACTCTGCTGGTACTGTTATGTCTATTCAAGGAGAGAGATCTGATAAGGCTTCTTCTTTGGCTGGCCGAGATGACAAAGCATCCGCTATGTATGGTCAGGTGTCTCATGCTGCTGAGCCCAACGGTACTCCAGAGTCATCACCTGTAGCAACAAATGATGATGGTTTAGAGGGTGCCGGGTTTGTGTCAAACAGGACTAATGAAGAGGTTGATGATGACGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAATGTTGACATCACTCCTGTAGTTAAGCCTATCCGGGAACCACGGGTTGTTGTACAAACTTTGAGTGAGGTTGACATATTGGATGATGGGTACCGCTGGCGTAAGTATGGCCAAAAGGTTGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAATGCTGGTTGCCCTGTCAGAAAACATGTGGAGAGGGCATCGCATGATCCGAAGGCAGTGATAACCACATATGAGGGTAAACACAATCATGATGTACCAGCTGCTAGGAATAGCAGCCATGACATGGCAGTACCAGCAGCTGCAGCAGGGGGACAGACTAGAATTAAGTTAGAAGAAAGTGATACCATTAGCCTTGACCTTGGGATGGGCATTAGCTCAGCTGCTGAACATAGATCAAACGGGCAAGGGAAAATGCTGCACTCAGAGTTTGGGGGCACTCAAACTCACACCAGCAATTCCAATTTCAAGTTTGTTCATACTACCTCAGCTCCAGTATACTTTGGTGTTCTAAATAACAGCTCTAATCCCTATGGTTCCAGAGACAATAGGAGTGATGGTCCATCTTTAAACCATTCCTCATATCCTTGCCCACAGAGCATGGGAAGAATACTAATGGGTCCATGA 1767 0.4573 MDAATNSSETHPSSEFQMTGASEDPNRSGSGQNSTARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLRKLQQTVHGSMASAASSTFPVTTACFNTNTVDDRKSSFFEFKPLNRSNMVPADFNNHVSKQSTQVEGPGKAQSFASSPLVESEIAVPSNELSLSSPVQMVSSSASAPVDVDLDDNNHKGNTATGLQASHVEIRGSGLSVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSCRYSAGTVMSIQGERSDKASSLAGRDDKASAMYGQVSHAAEPNGTPESSPVATNDDGLEGAGFVSNRTNEEVDDDDPFSKRRKMELGNVDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMAVPAAAAGGQTRIKLEESDTISLDLGMGISSAAEHRSNGQGKMLHSEFGGTQTHTSNSNFKFVHTTSAPVYFGVLNNSSNPYGSRDNRSDGPSLNHSSYPCPQSMGRILMGP 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01816 588 Pfam WRKY DNA -binding domain 408 464 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g01816 588 Pfam WRKY DNA -binding domain 232 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g01816 588 ProSiteProfiles WRKY domain profile. 226 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g01816 588 SUPERFAMILY WRKY DNA-binding domain 399 467 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo9g01816 588 MobiDBLite consensus disorder prediction 1 39 - -
Pumo9g01816 588 ProSiteProfiles WRKY domain profile. 402 467 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g01816 588 Gene3D WRKY domain 392 468 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo9g01816 588 Gene3D WRKY domain 223 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo9g01816 588 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 67 506 IPR044810 GO:0003700
Pumo9g01816 588 FunFam WRKY transcription factor 221 291 - -
Pumo9g01816 588 SUPERFAMILY WRKY DNA-binding domain 228 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo9g01816 588 FunFam WRKY transcription factor 33 394 460 - -
Pumo9g01816 588 SMART WRKY_cls 231 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g01816 588 SMART WRKY_cls 407 466 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g01816 588 MobiDBLite consensus disorder prediction 557 578 - -
Pumo9g01816 588 MobiDBLite consensus disorder prediction 1 40 - -
Pumo9g01816 588 MobiDBLite consensus disorder prediction 557 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01816 Pumo-Chr9 47284586 47290646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01816 41 588 WRKY Transcription Factor Family AT4G26640 56.757 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo9g01816 WRKY 1.5e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01816 9 47284586 47290646 Pumo9g01816 9 47284586 47290646 ECH
Pumo1g00830 1 12602921 12608959 Pumo9g01816 9 47284586 47290646 PCT