Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00350 ATGGAGAGAGATTTTCTGGGTCTGAGCTCAAAAGAACCATTGGCTGTGGTGAAGGAAGAGATGAATAATAGTATTGGAAGCAAAGACTCAGGTTTCACAAACGGAGCAGTGGTAAAATGGCCCTTCATGAACAAAGTATCTGTCCATCCTCATTTGATGTCTTTCAATACTCCTCAGAAATCTGTCAATCATGATGGACAAGGTGGCATTCATTTTTCCCTGACTCCATATCCTGTACAACATGAGGTGAATTCTGTGAACCGTCCTCATGATATGAAGATGTTTTCAGTTCCCAATCAAGCAATTTCAGTATCCATGGGACATCCATCCCTAAAGAATCATTTTGCAACTGTTGGTCAGAGTATGAATGGAGCCAGTGTGAAGCAACCACTACTCGGGGGAATACCTGTTACAGCGCCTCATTCAGTTCTTCCCATTGTTGGTGCTGTTGCTGGAATTACTGAAACATGTGTGAAACCATCTGTACCTGCCCCTAAACTTACCATCTTCTATGCGGGCACTGTGAATGTCTTTGATGATATCTCTCCTGAGAAGGCACAAGCTATCATGTTGTTGGCTGGGAATGGCGTGTCAGCTGCTTCTGACGTGGCACACGCACAGCCCAATGTTCAGGCGCCCAGCTTGAAGTTGGCAGTAGGTGATGGTGTGCCTGTTAGGCAACCCATACCACCCTGCTCTGGTCTTTCGAGTCCATTATCTGTTTCTTCACATACTGGTGCACAGTCAGGGAGTGGTTCAAGCAGCAATGATGAATTTTTCGTGGCTAAAACATCTGGAGGTACCGCTGCATCTGTTAACAAAGTGGAGACTCCGAAAGTAGTCAACACAACCACCATGCTACCATCAGCTGTGCCACAGGCTCGCAAGGCGTCATTGGCTCGATTTTTGGAGAAGCGCAAGGAAAGGGTGATGCATGCAGCACCATATAACCTCAACAAGAAGTCTGAGAATGTGCCACAGCAGAATACAATGGTTTCTAACATCACTGCAAGCGCAGGTGCTAATGCACTGTCAACGAAGCAAGGATAG 1050 0.4619 MERDFLGLSSKEPLAVVKEEMNNSIGSKDSGFTNGAVVKWPFMNKVSVHPHLMSFNTPQKSVNHDGQGGIHFSLTPYPVQHEVNSVNRPHDMKMFSVPNQAISVSMGHPSLKNHFATVGQSMNGASVKQPLLGGIPVTAPHSVLPIVGAVAGITETCVKPSVPAPKLTIFYAGTVNVFDDISPEKAQAIMLLAGNGVSAASDVAHAQPNVQAPSLKLAVGDGVPVRQPIPPCSGLSSPLSVSSHTGAQSGSGSSSNDEFFVAKTSGGTAASVNKVETPKVVNTTTMLPSAVPQARKASLARFLEKRKERVMHAAPYNLNKKSENVPQQNTMVSNITASAGANALSTKQG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00350 349 MobiDBLite consensus disorder prediction 229 258 - -
Pumo8g00350 349 SMART tify_2 160 195 IPR010399 -
Pumo8g00350 349 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 105 323 IPR040390 -
Pumo8g00350 349 Pfam Jas motif 292 316 IPR018467 -
Pumo8g00350 349 ProSiteProfiles Tify domain profile. 160 195 IPR010399 -
Pumo8g00350 349 Pfam tify domain 165 194 IPR010399 -
Pumo8g00350 349 MobiDBLite consensus disorder prediction 233 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00350 Pumo-Chr8 11290477 11294333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00350 38 322 Tify Gene Family AT3G17860 37.500 4.98e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pumo8g00350 tify 5.6e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00350 8 11290477 11294333 Pumo8g00350 8 11290477 11294333 ECH