Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00289 ATGGAAAAAACCCACATCGAATGGAAAATCCACGCGCAGCAGCAGCAGCGATACTCCTCCAAGCTCCACCAGGCGCTCGCGCGCTTCAACATCTCCAGGGACGCGCCACGCGGCAGTGCGGTGCGCGAGGCCGTGGTCGGAGGGGGTGAAAGGGATTTCGACGAGGTTCATGGTGGAGTTTGCATTCTCTTCGTTTATTTCCTCTTCGTCTTTTTCCTCAGATACCCTGTGTCAAAATTGTTCATTCTTAAAATGTTCTCCTCCTTTAGGCTAATGGCCTGCGAAGGTGACAGGGACTGGGAGGTTTGGTTGTGGAAGGTTGTGTCTGTGCGGTGCGTTTTGATTCTTCGGCTATGCTCACTCTCCGACATTGTGCTGCGCTTCTCCTCCGACTCTGAATTCTCGCGAAACGACGTCGTTGATTTCGGCATGGCTCCCGGCGCGGCGGAGTTCCCGGTGGGTCTCCGGGTTCTGGTGGTCGACGACGACGCCACCACGTTGAAGATTATCGAGCAAATGTCCATTCGCTGCCGTTACCGCGTTACCACATGCACTGAAGCTGCTGTGGCTTTGAATCTTCTGCGGGAAAGGAAAGGTTGTTTTGATGTGGTACTAAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGCTGGAAATGGACCTTCCTGTAATTATGATGTCTGGTGATAGTACAACTAGTGCGGTCATGAAAGGAATCAGACATGGGGCTTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAACTGAGGAATATATGGCAGCATGTTGTTAGGAAAATCAGGAATAAAGAACATGATAATTCTGGCAGCATGGAAGACAGTGATTGGAATAAACGGGGGAATGATGATGCTGAATATACTTCTTCTGCTGCTGACGCAGCAGAAGTAGTTAAAGCACCAAAAAAGAGGAGCAGTTTACAAGAAGAAGATATTGAATTGGAGAGTGATGATCCAGCTACATCTAAGAAGCCCCGTGTAGTGTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTTGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCAAGCCATTTGCAGAAATTTAGACTTTATTTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGGGATACTAAACGCAGTTCCTGGGACTATAGAATCCAAGCTGGGTGCTACTGGAAGATTTGACATACAAGCTTTGGCTGCTGCTGGCCATGTTCCCCCTGAAACACTTGCAGCCCTTCATGCCGAGCTCTTTGGTCGCCCGGCAACTAACATAATGCCTACAGTGGACCAGACTACCCTACTGCAAGCATCGATACAGGGGCTAAAACATTCCCATGCTGAACATGCTGTGGCGTATGGTCAGCCTCTTGTAAAGTGTCCTTCCAACATTGGCAAGAATTTCTCTCCATCTATCTTAACTGTAAATGATACGTCATCAGGATATGGTGCATGGCCAGCACCAACAAAGGCAGCAGCAGCCCCAGCAAAAACAACAGCACAGCACCAGCACCAGCACCAGCAAAAACAACAGCAACAGCTGCAGCAGCAGTCACTGATACATGATCAAAGTCGTTCGATCAATGTTCAACCATCTTGCTTGGTGGTTCCCTCTCAATCCTCTGACACTTTCCAGGCAGTAAATAGTCCTGCTTCTGTCAATCAGGATTGCAGTTTTGGCAAGAATGCCATTATTGATTATAGTCTATTGTCACACAAAAATAATTCATTTAGTGCATCTCAATTTCCTGGTGAGGACACAAAAGCTCGAGGTGTTCTCTATGGGTATACTACAACCTCCACTTGTTCAACGGGCTCCAGCAATGGCAATATTCAGCTGCTTCAAAACTCAACTTTGACATTTGGTACTGCAAGACCTTTGCCTAGCCTTTTGCCCATGTCTGATAGACAAGATCCCTATGGTTTTAAATCGGGCGATTCACTTGATCAAGTATGCTTTAGGAATCTTGGGTTTGTTGGCAAAGGTACCTGCATTCCAAGTAGGTTTGTAGAAAATGAAATTGAGTCATCTGTAAGTGATTTTAGTCAAATGAAAGTCAATGTAGATAGCAGTGGCAACACACTGAAGGAGGAGCCAAATTTTATAAATATTCCAAAAGTGAGCCACCCAATCATAGAAAGATATCCATCTCATGATCATTCAAGTGTGTTCACTGAATAG 2268 0.4599 MEKTHIEWKIHAQQQQRYSSKLHQALARFNISRDAPRGSAVREAVVGGGERDFDEVHGGVCILFVYFLFVFFLRYPVSKLFILKMFSSFRLMACEGDRDWEVWLWKVVSVRCVLILRLCSLSDIVLRFSSDSEFSRNDVVDFGMAPGAAEFPVGLRVLVVDDDATTLKIIEQMSIRCRYRVTTCTEAAVALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKIRNKEHDNSGSMEDSDWNKRGNDDAEYTSSAADAAEVVKAPKKRSSLQEEDIELESDDPATSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNGILNAVPGTIESKLGATGRFDIQALAAAGHVPPETLAALHAELFGRPATNIMPTVDQTTLLQASIQGLKHSHAEHAVAYGQPLVKCPSNIGKNFSPSILTVNDTSSGYGAWPAPTKAAAAPAKTTAQHQHQHQQKQQQQLQQQSLIHDQSRSINVQPSCLVVPSQSSDTFQAVNSPASVNQDCSFGKNAIIDYSLLSHKNNSFSASQFPGEDTKARGVLYGYTTTSTCSTGSSNGNIQLLQNSTLTFGTARPLPSLLPMSDRQDPYGFKSGDSLDQVCFRNLGFVGKGTCIPSRFVENEIESSVSDFSQMKVNVDSSGNTLKEEPNFINIPKVSHPIIERYPSHDHSSVFTE 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00289 755 Gene3D - 155 289 - -
Pumo8g00289 755 ProSiteProfiles Response regulatory domain profile. 156 271 IPR001789 GO:0000160
Pumo8g00289 755 NCBIfam myb-like DNA-binding domain, SHAQKYF class 337 390 IPR006447 GO:0003677
Pumo8g00289 755 SMART REC_2 155 267 IPR001789 GO:0000160
Pumo8g00289 755 Gene3D - 333 396 - -
Pumo8g00289 755 MobiDBLite consensus disorder prediction 525 550 - -
Pumo8g00289 755 FunFam Two-component response regulator 333 396 - -
Pumo8g00289 755 Pfam Myb-like DNA-binding domain 339 387 IPR001005 -
Pumo8g00289 755 MobiDBLite consensus disorder prediction 517 550 - -
Pumo8g00289 755 SUPERFAMILY CheY-like 154 276 IPR011006 -
Pumo8g00289 755 SUPERFAMILY Homeodomain-like 334 394 IPR009057 -
Pumo8g00289 755 Pfam Response regulator receiver domain 157 266 IPR001789 GO:0000160
Pumo8g00289 755 CDD REC_typeB_ARR-like 157 271 - -
Pumo8g00289 755 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 334 393 IPR017930 -
Pumo8g00289 755 MobiDBLite consensus disorder prediction 278 296 - -
Pumo8g00289 755 MobiDBLite consensus disorder prediction 278 333 - -
Pumo8g00289 755 PANTHER TWO-COMPONENT RESPONSE REGULATOR 155 534 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00289 Pumo-Chr8 8554156 8563822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00289 189 451 Response Regulator Gene Family AT3G16857 54.545 1.55e-88 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo8g00289 Response_reg 2.3e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00289 8 8554156 8563822 Pumo8g00289 8 8554156 8563822 ECH