Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00279 ATGGTGTCAAAATCCTATTCAAACCTATTGGAGTTGGCCTCTGGAGAGGCTCCATCATTTGGGTACATGAACAGGAGAATTCCAAGAATTATGACTGTGGCTGGGTTGATATCAGATGTTGATGATGACCCAGTGGAGAGTGTGTGCTCTGATCCGTCGTCGTCGACCGCGCACCGAGACCGGATAATCATGGTGGCTAATCAGCTTCCCATAAGGGCTCAGAGGAGGCCAGATGGGAATAATAGGAGTTGTTGGTCTTTTGAGTGGGATGAGAATGCACTTCTTCAGCTGAAAGATGGGTTAGGGGATGATGATATTGAGGTCATTTATGTTGGATGTCTTAAGGAGGAGGTGCATCCAAATGAACAAGATGAGGTTTCACTGACACTTCTTGAGACCTACAAGTGTGTCCCAACTTTTCTCCCAGCTGACCTGTTTACTAAGTACTATCATGGTTTTTGCAAGCAGCAGTTGTGGCCACTGTTCCATTACATGTTGCCCTTGTCACCAGAACTTGGTGGGAGGTTTAATAGGTCACTGTGGCAGGCTTATGTGTCGGTCAATAAAATTTTTGCAGATAGGATTATGGAAGTTATTAACCCTGAAGATGATTATGTGTGGATACATGATTATCATCTGATGGTGTTACCAACTTTCTTGAGGAAGAGATTCAACAGGGTGAAACTGGGGTTCTTCCTTCACAGTCCATTCCCTTCATCAGAAATATATAAAACATTACCTGTTAGGGAGGAGATCCTGAGAGCCCTCCTTAATTCGGATTTGATTGGTTTCCACACTTTTGATTATGCGCGGCATTTCCTCTCCTGTTGTAGCCGGATGCTCGGCCTTACCTACGAATCCAAGCGAGGTTATATTGGGATTGAGTACTATGGTAGGACTGTTAGTATCAAAATTCTTCCTGTTGGTATTCACTTGGGTCAGCTTCAATCGGTTTTGAGGATGCCTCAGACTGAAGAAAAAGTTTGCGAGCTCATTAGACAGTTTTCTGATAAAGGCAGGACATTGTTGCTTGGGGTGGATGACATGGATATTTTCAAGGGAATAAGTTTGAAGCTATTGGCCATGGAGCAGCTTCTCATTCAGCACTCTGAGTATCGGGGAAAAGTAGTGCTGGTCCAGATAGCTAATCCTGCGAGGGGACGAGGGAAAGACGTGAAAGAAGTGCAAGCCGAGACGAAGGCCACGGTGAAACGGATAAATGAAACATTTGGGGAACCCGGGTATGATCCTGTCATTCTGATTGAGGAGCCTCTCAAGTTTTATGAGAGAGTTGCTTACTATGTTGTTGCGGAGTGTTGTTTAGTCACTGCGGTAAGGGATGGAATGAATCTCATACCGTATGAATATATCATCAGTCGTCAAGGAAATGAAACGTTGGATAAAGTTTTGGGTCTAGCTTCCTCCCCTAAGAAGAAAAGCATGTTAGTTGTGTCTGAATTCATTGGCTGTTCCCCATCTTTAAGTGGGGCAATCAGAGTGAACCCGTGGAATATTGATGCAGTAGCTGATGCAATGGACTCGGCGCTGGAAATGGCTGATTCGGAGAAAGAGCTCAGGCATGAAAAGCATTATAGATATGTTAGTACTCATGATGTTGGGTACTGGGCTCGAAGCTTCTTGCAAGATTTGGAAAGGACTTGTAGTGATCATGTACGGCGAAGGTGGTGGGGGATTGGGTTTGGATTAAGCTTTAGAGTTGTTGCACTTGATCCAAACTTCAAGAAGCTCTCAATGGAGCACATAGTTTCAGCTTACAAGCGGACAACAACTAGGGCAATCCTTCTCGACTACGATGGTACACTAATGCCTCAATCATCCACCATTGATAAGAGTCCAAGCAGTAAATCCATTGAAACTCTTAGTAGTTTGTGTAGAGATAAGAACAACATGGTTTTCCTTGTTAGTGCTAGAAGCCGAAAGATGCTTTCCGAATGGTTTTCTCCTTGTGAGAATCTGGGAGTTGCAGCTGAGCATGGTTACTTTCTAAGAATGAAGCGAGATGAAGAGTGGGAAACACATGTTGCCGCAACAGACTGTAGTTGGAAACAAATTGCAGAACCTGTAATGAAACTTTATACTGAAACAACTGATGGATCCACCATTGAAGACAAGGAGACTGCACTTGTTTGGTGCTATGAGGATGCAGATCCAGACTTCGGATCATGCCAAGCTAAGGAACTTCTTGATCATCTTGAGAGCGTGCTTGCAAATGAGCCAGTAACAGTCAAGAGTGGCCAGAATAATGTAGAGGTTAAACCACAGGGTGTGAGCAAGGGACTAGTGGCCACACGCCTACTTTCTGCCATGCAAGAAAAGGGAATGTGCCCTGATTTTGTTTTGTGTATAGGAGATGACAGGTCTGATGAAGACATGTTCGAGGTAATCACCAGCTCAATGGGCGGTCCGATCGCGCCAAGGGCCGAGGTATTCGCGTGCACGGTTTGTCGAAAACCCAGTAAGGCTAAGTACTATCTGGATGATACAACTGAAATAGTGAGATTGCTTCAGGGCTTAGCCTGTGTTTCAGAACAAATAGACAAATAG 2565 0.4452 MVSKSYSNLLELASGEAPSFGYMNRRIPRIMTVAGLISDVDDDPVESVCSDPSSSTAHRDRIIMVANQLPIRAQRRPDGNNRSCWSFEWDENALLQLKDGLGDDDIEVIYVGCLKEEVHPNEQDEVSLTLLETYKCVPTFLPADLFTKYYHGFCKQQLWPLFHYMLPLSPELGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPVREEILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTVSIKILPVGIHLGQLQSVLRMPQTEEKVCELIRQFSDKGRTLLLGVDDMDIFKGISLKLLAMEQLLIQHSEYRGKVVLVQIANPARGRGKDVKEVQAETKATVKRINETFGEPGYDPVILIEEPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNETLDKVLGLASSPKKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMADSEKELRHEKHYRYVSTHDVGYWARSFLQDLERTCSDHVRRRWWGIGFGLSFRVVALDPNFKKLSMEHIVSAYKRTTTRAILLDYDGTLMPQSSTIDKSPSSKSIETLSSLCRDKNNMVFLVSARSRKMLSEWFSPCENLGVAAEHGYFLRMKRDEEWETHVAATDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNNVEVKPQGVSKGLVATRLLSAMQEKGMCPDFVLCIGDDRSDEDMFEVITSSMGGPIAPRAEVFACTVCRKPSKAKYYLDDTTEIVRLLQGLACVSEQIDK 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00279 854 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 728 854 - -
Pumo8g00279 854 Gene3D Glycogen Phosphorylase B; 53 316 - -
Pumo8g00279 854 FunFam Alpha,alpha-trehalose-phosphate synthase 318 535 - -
Pumo8g00279 854 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 554 - -
Pumo8g00279 854 Gene3D Glycogen Phosphorylase B; 317 535 - -
Pumo8g00279 854 NCBIfam HAD-IIB family hydrolase 600 802 IPR006379 -
Pumo8g00279 854 CDD HAD_TPP 599 840 - -
Pumo8g00279 854 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 846 IPR001830 GO:0003824|GO:0005992
Pumo8g00279 854 CDD GT20_TPS 61 551 IPR001830 GO:0003824|GO:0005992
Pumo8g00279 854 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 597 715 - -
Pumo8g00279 854 Pfam Glycosyltransferase family 20 61 551 IPR001830 GO:0003824|GO:0005992
Pumo8g00279 854 NCBIfam trehalose-phosphatase 597 845 IPR003337 GO:0003824|GO:0005992
Pumo8g00279 854 Gene3D - 731 854 IPR023214 -
Pumo8g00279 854 Gene3D - 597 730 IPR023214 -
Pumo8g00279 854 Pfam Trehalose-phosphatase 601 835 IPR003337 GO:0003824|GO:0005992
Pumo8g00279 854 SUPERFAMILY HAD-like 598 846 IPR036412 -
Pumo8g00279 854 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00279 Pumo-Chr8 8332249 8336901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00279 1 852 Trehalose Biosynthesis Gene Families AT1G68020 80.578 0.0 1447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00279 8 8332249 8336901 Pumo8g00279 8 8332249 8336901 ECH