Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00257 ATGGGTCTTAGTTTGAAGATGCAGAGCCACCATCCTGTGGCTTTGAGGTTGCATGATCAAATGGGGTCTAAGAGAAAGTACACTTTCATTCAGGCTCATAGAGCTTGGCTTCCAAAGTTTTTGCTGCTGTGGATCCTGCTAATGGCATTGATCAGTTGGTGCATCTATAGCAAAATGGATGATGACACTAAAGTCAGAAGGAAAGAGGTGTTAGGTAGCCTATGTGATCAAAGGGCAAGAATGTTGCAAGATCAGTTTAGTGTTAGTGTTAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGATACCCTTCTGCCATTGACCAGGAAACCTTTGCTGAGTATACAGCCAGGACAGCATTTGAACGGCCATTGCTGAGTGGTGTGGCCTATGCACAAAGAGTTGTTAATTCTGAGAGAGAGAGATTTGAGAAAGAACATGGATGGGTTATAAAGACAATGGAAAGAAAGTCTTCACTGGTTAGAGATGAGTATGCGCCGGTGATATTTGCGCAAGAAACTCTCTCATATCTTGAGTCTCTTGATATGATGTCTGGGGAGGAGGACCGAGAAAACATTTTAAGGGCTAGAGCCACTGGGAAAGCGGTTCTGACTAGCCCTTTCAGGCTGTTGGGTTCTCACCATCTTGGTGTGGTTTTAACGTTCCCTGTGTACAAATCTAAGCTCCCTCAGAAGCCAACAGTGGAAGAACGCATTGAAGCAACTGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTTGTAAAGAATTTACTTGGGCAACTTGATGGTAACCAATCAATTTTGGTGAATGTATATGATATTACAAACTATACTAATCCCCTAATCATGTATGGCAACCAATATGAAGAAGGCGATATGTCTCTTGCCCATGAAAGCAAGCTTGATTTTGGAGATCCTTACAGGAAACATCAGATGATATGCAGGTATCATCAGAAGGCACCGACGAATTGGATAGCACTTACCACGGCATTCCTATTCTTTGTGATTCTTTTTTTAGTGGGTTACATTTTATATGGTGCTGGAAACCATATTGTCAAAGTTGAAGATGATTTCCATGAAATGCAGGAATTGAAAGTCCGAGCAGAAGCAGCTGATGTTGCCAAGTCCCAGTTTCTAGCTACGGTCTCTCATGAAATTAGAACACCCATGAATGGTATTTTAGGAATGCTTGCTCTGCTTTTAGATACAGAATTGAGTTCAACCCAACGAGATTATGCTCAGACTGCTCAAGCATGTGGAAAGGCACTGATAACATTGATAAATGAGGTGCTGGACCGTGCAAAAATTGAAGCTGGCAAGTTAGAGCTGGAGGCTGTTCCATTTGATCTTCGTTCTATAATTGATGATGTCCTTTCTCTTTTTTCTGAGAAATCTAGACACAAAGGTTTAGAGCTGGCTGTGTTTGTTTCTGATAAAGTTCCGGATATTGTCATGGGAGATCCTGGGAGATTCAGACAAATAATAACAAATCTTGTTGGCAACTCTGTTAAATTTACTGAACAAGGACATATATTTGTTAAAGTCCATCTAGCGGACAATCGAAGGTCCATAATGAATGGAAAACATGAGACTTTTCTAAATGGAGAATCAGATGAAGTTTTCCATTTATCTGGTGATTATCATTTCAAAACCTTAAGTGGATGTGAAGCAGCTGATGAACGGAACTGTTGGGATAATTTTAAGCATCTAATTGCTGATGAAGAATATGGCCTTGATTCTTCAAGAGAAATGGCGGCTGCTGGTGAATCTTCTGAGCAAGTCTCATTGAGGGTATGTGTGGAGGACACTGGAATTGGAATTCCTTTCTCAGCTCAGGATAGGATATTCATGCCATTTGTGCAGGCTGACAGCTCAACCTCACGAAATTATGGGGGTACTGGTATTGGCTTGAGTATCAGTAAATGTCTGGTTGAACTAATGGGTGGTCAGATAAACTTCATAAGTCGACCCCAGGTTGGGAGCACCTTTTCTTTTACTGCAGTTTGTGTAAAATTTAAGAAAAGTTCAGTTAGCGACAAGCAGAAAAATTTGGAAGATCTGCCTTCAAGTTTTAGAGGGATGAAGGCCATTGTGGTTGATGGGAAGCCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTAGGGATACAAGTTAAAGTTGCAACTAGCATCAGTAAGGCTGTTGCCTTATGTGGTAAAAGTGGTTCTTTGACATCAGGAATGTTCCAGCCTGATATTATCATGGTTGAGAAGGACACATGGATATCTGGAGAGGATGGCATTTTCAATATATGGAAACAGAATGGTCGTATGTTTAAGATGCCTAAAATGATCCTTCTGGCAACCAATATTAGTAAAGCCGAATTTGATAAAGCTAAGGCGACAGGTTTCACTGATACTGTGATCATGAAGCCTCTGAGAGCTAGTATGGTGGCTGCTTGTCTTCAGCAAGTTTTGGGGATGGGGAATAAGAGGCAGCTAGGGAAAGACATGCCTAATGGTTTTCTACATAGCCTTCTCTATGGAAAGAAAATTTTGGTGGTTGATGACAATGTGGTAAACCGGAGGGTTGCAGCAGGTGCACTAAAGAAGTTTGGAGCTGATGTGAAGTGTGCTGAAAGTGGCAAAGCTGCGCTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGATGGATTTGAAGCAACCAGTCGGATTCGGATGATGGAGAGCAAGGCAAATGAGGAGATGAATAATGGGAGTGAGTGGCATGTGCCTATATTGGCCATGACAGCTGATGTGATCCATGCCACATACGACAAGTGCTTGAAATGCGGCATGGATGGATATGTCTCAAAGCCATTTGAGGAAGAGAATCTGTATCAGGAAGTTGCAAGGTTTTTCAAATCCAAGACCATCTCAGACTCATGA 2967 0.4186 MGLSLKMQSHHPVALRLHDQMGSKRKYTFIQAHRAWLPKFLLLWILLMALISWCIYSKMDDDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRYPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERERFEKEHGWVIKTMERKSSLVRDEYAPVIFAQETLSYLESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPQKPTVEERIEATAGYVGGSFDVESLVKNLLGQLDGNQSILVNVYDITNYTNPLIMYGNQYEEGDMSLAHESKLDFGDPYRKHQMICRYHQKAPTNWIALTTAFLFFVILFLVGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSIIDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLADNRRSIMNGKHETFLNGESDEVFHLSGDYHFKTLSGCEAADERNCWDNFKHLIADEEYGLDSSREMAAAGESSEQVSLRVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTAVCVKFKKSSVSDKQKNLEDLPSSFRGMKAIVVDGKPVRAAVTRYHLKRLGIQVKVATSISKAVALCGKSGSLTSGMFQPDIIMVEKDTWISGEDGIFNIWKQNGRMFKMPKMILLATNISKAEFDKAKATGFTDTVIMKPLRASMVAACLQQVLGMGNKRQLGKDMPNGFLHSLLYGKKILVVDDNVVNRRVAAGALKKFGADVKCAESGKAALEMLQLPHNFDACFMDIQMPEMDGFEATSRIRMMESKANEEMNNGSEWHVPILAMTADVIHATYDKCLKCGMDGYVSKPFEEENLYQEVARFFKSKTISDS 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00257 988 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 493 674 IPR003594 -
Pumo8g00257 988 ProSiteProfiles Response regulatory domain profile. 853 980 IPR001789 GO:0000160
Pumo8g00257 988 FunFam Histidine kinase 4 353 444 - -
Pumo8g00257 988 SMART CHASE_2 108 293 IPR006189 -
Pumo8g00257 988 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 447 IPR036097 GO:0000155|GO:0007165
Pumo8g00257 988 SMART HKATPase_4 493 678 IPR003594 -
Pumo8g00257 988 Gene3D - 696 831 - -
Pumo8g00257 988 Gene3D - 847 987 - -
Pumo8g00257 988 CDD HATPase_EvgS-ArcB-TorS-like 498 674 - -
Pumo8g00257 988 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 976 - -
Pumo8g00257 988 Gene3D CHASE domain 112 327 IPR042240 -
Pumo8g00257 988 ProSiteProfiles Histidine kinase domain profile. 388 678 IPR005467 -
Pumo8g00257 988 Gene3D - 59 111 - -
Pumo8g00257 988 Gene3D - 355 444 - -
Pumo8g00257 988 Gene3D - 445 678 IPR036890 -
Pumo8g00257 988 CDD HisKA 381 442 IPR003661 GO:0000155|GO:0007165
Pumo8g00257 988 CDD REC_hyHK_CKI1_RcsC-like 854 976 - -
Pumo8g00257 988 FunFam Histidine kinase 4 112 327 - -
Pumo8g00257 988 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
Pumo8g00257 988 SMART REC_2 852 976 IPR001789 GO:0000160
Pumo8g00257 988 Pfam Response regulator receiver domain 854 976 IPR001789 GO:0000160
Pumo8g00257 988 SUPERFAMILY CheY-like 851 980 IPR011006 -
Pumo8g00257 988 Pfam His Kinase A (phospho-acceptor) domain 381 446 IPR003661 GO:0000155|GO:0007165
Pumo8g00257 988 Pfam CHASE domain 111 291 IPR006189 -
Pumo8g00257 988 SMART HisKA_10 381 446 IPR003661 GO:0000155|GO:0007165
Pumo8g00257 988 PRINTS Bacterial sensor protein C-terminal signature 638 656 IPR004358 GO:0016310|GO:0016772
Pumo8g00257 988 PRINTS Bacterial sensor protein C-terminal signature 662 675 IPR004358 GO:0016310|GO:0016772
Pumo8g00257 988 PRINTS Bacterial sensor protein C-terminal signature 603 617 IPR004358 GO:0016310|GO:0016772
Pumo8g00257 988 PRINTS Bacterial sensor protein C-terminal signature 621 631 IPR004358 GO:0016310|GO:0016772
Pumo8g00257 988 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 435 673 IPR036890 -
Pumo8g00257 988 ProSiteProfiles Response regulatory domain profile. 702 828 IPR001789 GO:0000160
Pumo8g00257 988 SUPERFAMILY CheY-like 698 830 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00257 Pumo-Chr8 7412781 7420143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00257 11 988 Histidine Kinase Gene Family AT2G01830 71.042 0.0 1405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo8g00257 HATPase_c 1.1e-30 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00257 8 7412781 7420143 Pumo8g00257 8 7412781 7420143 ECH