Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00252 ATGATTGGAGGCAAAGATCTTGTTCCCAATGGCGTTGACTCCGAGGGGGAGAACTCAAGGAGCAAGGTGCAACATCAGCATCATGGTTTTGCTCATGCCAACAAGGAACATCCTCAAGAGAAGAAAAAGGTTGGTGTTGATGAGTTTCAGTCAATACCCTCAAAGGTTGCCACTTCTGGGTTGCAAGAGTTGACCCTCAGCTACCTCTGTGAGAACCCAAAATTGGGTCTTGTTGAGAGAGAGGTTGGTGATAGAAGCTTGGTGAAGAAGGGCAAAGAAGTTGTTGTTTATGGGAATTCAGATCAAGATGAGAAACGCCAACCCGGGTTGGGTCTGGCAGAAGGGATTAGTCTCTCACAACGTGATGAATTAAGGTTTAAATCACCGTTGGCGGAAGTGTCCGCATTTAGTGCACAACAGTACTTCGAACAGGATTGTCTCCGAAGGAAGATACCTTTGGGAAACCAAAAGCAAGATCAAGATGAGAAATGGGTAGAGAGGGATTTCTTGAGTTTGAGTGAGACTAGGGAGAATTCTTCAAAGAGATCCATTGAGGAAGAAGAGTGTGAAAGGGAGAGGAATGGTGGCAACAAGAAGCAGAAGCTTGAGACTCTTAGTCTCTCTCTTGCTTTGCCTGATGTGTCGCTCTCTCTCACGGCCTCAAACGCTTTGCAAAATGGTGACCAGCAACTTGTTAGGCCAAAGCCTAGTAAGCCAGCCACAAGGACCACAACTACGATCAATTCATGTTCCAATGATTACACAGCAGCCTCTATGTCTCACTCTTGCTCTCACCCTTTCTCACACAACCCAAGTTGCTCACGTACCCGAAATTCGACCGAGAATTTTGAGTATTCACACAGCAAAGATGATCAAATTTGGCATTGTGGGGAGGGGACTAATGGGTCGGTTCATAGCAGGTTCAAGCCAATAGGGGATGGGGTTGCTTTGGTCAATCATTCCTTCATGCAAGGGAACAATAGTCAGTATAAGGCTACTAGCTCAGATAACCAGTCTTTTTTCCCTTCAGAATTGCCTGCAAGAGTGAGATTTGAAGCTCAGTCAGAGGGCTCAAGAGGAAAGAATTCTGGGAATCTAAGAGGCTTGGAAGGTGTGGATGGTGGGAAAATGATGAAGTTTTCTACATCAGAGAGAGTTCTAAGAGAAATTGTGTCTGAGTCTATCCCAGCCATGGCATTGACATTTCAGGAGTTCACTGATGAAGTCATAACTTCAATTAAGGAAGACTTGAAAGGTCTAATTGAAATGCCAGAGAAGAAAGGGGAATTAGAGAGCCTCCAGAACCGGCTCGGCCGAAGATCTGACCTCACCAGAGAGACTCTTTCAAAGTGTCATAAGCAGCAGCTAGAGATTTTGGCTGCCATCAAGATGGGGCTTGGGAGTTTCTTGTCCGGTGAGTTCCAATTCGCGGAGATGGTGGATGTTTTCTTGTACATGAGATGTAGAAATGTGAACTGCAAGAACTTGCTGCCTGTTGATGATTGTGACTGCAAGGTGTGTTCAGGAAATAAGGGCTTTTGCAGTTCTTGCATGTGTCCTGTTTGTATGAACTTTGATTGTGCAAGTAACACTTGCAGTTGGGTTGGTTGTGATGTTTGTTCCCACTGGTGTCATGCTGCCTGTGCCATTCAGAGGAATCTAATCAAACCTGGGCCTAGCTTGAAGGGTCCTTCTGGGACCTCTGAGGTGCAGTTTCATTGCATTGGCTGTGGACATCCTTCAGAAATGTATGGCTTTGTCAAAGATGTCTTTGTATGTTGTGCCAAGGATTGGGGCCTAGAAACCTTGGTGAAAGAGCTTGACTGTGTGAGGAGGATTTTCCGGGAAAGCGAAGATCGCAAAGGGAAGGAATTGCATATTAAAACGGAAGATATGCTGTTAAAGCTTCAAGCCAAACTGGTTTCTCCTTTGAATGCCTGCAACCACATCATACAGTTTTTCAACTATGGGGATGGCATGTCAGAAATTCCTCCTTCTGCTATATCCTCAAAGGATGTGTCAACATCTAAGACTAACCTTACAATGGACACAACAACATCATCTCTTCCACAATCTACTTCTCTAATACCAAAATACACTTATGACATGAGCTACACTATGTCAAATGATCTTCAACAGAAAGACCTCAAATCCTCCCTCTTGAGTGAACATAAAAATGAGACTGATTACCACTTAGAGGCTCTATTAAGGAAAGGAGGAGGAGGGGTTGAAAGCTTGGAGAGCATCGTCCGAATAAAAGAGGCTGAAGCAAGAATGTTCCAGAACAAGGCAGATGAGGCAAGGAGAGAGGCAGAAGGGTTCCAGAAGATGATCAAGACAAAGGCTGCACAGATGGAGGAAGAGTATGCAGAAAGGCTTGGCAAGCTCTGCTTGCATGAGGCAGAGGAAAGGAGGAAGAAGAAATTTGATGAACTCAGTGTCTTGCAAAACTCCCACTATGATTACTTGAACATGAAAAGCAGAATGCAAGATGAGATCCATGGTTTGTTGAAGAGAATGGAAGCAACAAAGCAGCAATGGGTTTAA 2547 0.4464 MIGGKDLVPNGVDSEGENSRSKVQHQHHGFAHANKEHPQEKKKVGVDEFQSIPSKVATSGLQELTLSYLCENPKLGLVEREVGDRSLVKKGKEVVVYGNSDQDEKRQPGLGLAEGISLSQRDELRFKSPLAEVSAFSAQQYFEQDCLRRKIPLGNQKQDQDEKWVERDFLSLSETRENSSKRSIEEEECERERNGGNKKQKLETLSLSLALPDVSLSLTASNALQNGDQQLVRPKPSKPATRTTTTINSCSNDYTAASMSHSCSHPFSHNPSCSRTRNSTENFEYSHSKDDQIWHCGEGTNGSVHSRFKPIGDGVALVNHSFMQGNNSQYKATSSDNQSFFPSELPARVRFEAQSEGSRGKNSGNLRGLEGVDGGKMMKFSTSERVLREIVSESIPAMALTFQEFTDEVITSIKEDLKGLIEMPEKKGELESLQNRLGRRSDLTRETLSKCHKQQLEILAAIKMGLGSFLSGEFQFAEMVDVFLYMRCRNVNCKNLLPVDDCDCKVCSGNKGFCSSCMCPVCMNFDCASNTCSWVGCDVCSHWCHAACAIQRNLIKPGPSLKGPSGTSEVQFHCIGCGHPSEMYGFVKDVFVCCAKDWGLETLVKELDCVRRIFRESEDRKGKELHIKTEDMLLKLQAKLVSPLNACNHIIQFFNYGDGMSEIPPSAISSKDVSTSKTNLTMDTTTSSLPQSTSLIPKYTYDMSYTMSNDLQQKDLKSSLLSEHKNETDYHLEALLRKGGGGVESLESIVRIKEAEARMFQNKADEARREAEGFQKMIKTKAAQMEEEYAERLGKLCLHEAEERRKKKFDELSVLQNSHYDYLNMKSRMQDEIHGLLKRMEATKQQWV 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00252 848 Coils Coil 750 777 - -
Pumo8g00252 848 CDD PHD_OBE1_like 518 577 IPR047578 -
Pumo8g00252 848 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 525 545 IPR004082 -
Pumo8g00252 848 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 401 423 IPR004082 -
Pumo8g00252 848 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 744 764 IPR004082 -
Pumo8g00252 848 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 440 455 IPR004082 -
Pumo8g00252 848 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 783 805 IPR004082 -
Pumo8g00252 848 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 479 500 IPR004082 -
Pumo8g00252 848 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 598 617 IPR004082 -
Pumo8g00252 848 MobiDBLite consensus disorder prediction 18 45 - -
Pumo8g00252 848 MobiDBLite consensus disorder prediction 175 199 - -
Pumo8g00252 848 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 58 847 IPR004082 -
Pumo8g00252 848 MobiDBLite consensus disorder prediction 1 45 - -
Pumo8g00252 848 Coils Coil 826 846 - -
Pumo8g00252 848 Pfam Coiled-coil region of Oberon 707 837 IPR032535 -
Pumo8g00252 848 MobiDBLite consensus disorder prediction 227 248 - -
Pumo8g00252 848 Pfam PHD - plant homeodomain finger protein 488 612 IPR032881 -
Pumo8g00252 848 Coils Coil 798 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00252 Pumo-Chr8 7316384 7320396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00252 488 585 PHD Gene Family AT5G57380 27.551 6.38e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00252 8 7316384 7320396 Pumo8g00252 8 7316384 7320396 ECH