Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01383 ATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTATTATGAACCCTTCAGAGGGGGACATCTTGGTCTTCAGCTCATGCCTGGTATGACTGAACGAGACACAAAGCCATTTTTGCCTGGTCGTGACCCGGCTATGTTAATGGGTGCAAATGGAACTTTTCACCCTCGAGATTGCGTTGTTTCGGAAGCACCAATGCCATTGAACTATGTCAGAGACAATTGGATAAACCAGAGAGATAGGTTTTTTAATATGCAGCAGCCCACAAATCCTAATTATACGGTACTTCCAGAGACATCAGGAGCTCCTAACTTGCAAATTATACAGCCACCACCTGATACGTCAAGAGATGAGAAAGTGGATAGAGTTGAAGAGTTAGTTGTCAAGAAGGAAGGTGGCCAGTCGAAGAAAAGGCACACTAAGGGTGCTCTGTCGACTCCAAAAGCTAAGAAACCTAGGAAGGCGAAGGACAACGGCAATGTTCCAGTTCAACGTGTGAAGCCACCGAAGAAGACTATGGAGCTTGTAATTAATGGAATTGATATGGACATTTCTGGTCTACCTATTCCAGTTTGTTCGTGCACTGGGGCTCCTCAGCAGTGTTATCGTTGGGGTTGCGGAGGTTGGCAATCGGCTTGTTGCACCACAAATGTGTCCATATATCCTTTGCCAATGAGCATGAAAAGGCGCGGTGCAAGGATAGCTGGGCGGAAAATGAGCCAAGGTGCTTTTAAAAAGGTTTTAGAGAAACTTGCAGCTGAAGGTTATAATTTTGCTAATCCTATTGATCTGAAGACTCATTGGGCCAGACATGGCACCAACAAGTTTGTCACTATCAGGTAG 843 0.452 MDDDVLNMPNWGYYEPFRGGHLGLQLMPGMTERDTKPFLPGRDPAMLMGANGTFHPRDCVVSEAPMPLNYVRDNWINQRDRFFNMQQPTNPNYTVLPETSGAPNLQIIQPPPDTSRDEKVDRVEELVVKKEGGQSKKRHTKGALSTPKAKKPRKAKDNGNVPVQRVKPPKKTMELVINGIDMDISGLPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01383 280 MobiDBLite consensus disorder prediction 114 133 - -
Pumo6g01383 280 MobiDBLite consensus disorder prediction 86 166 - -
Pumo6g01383 280 PANTHER - 1 280 IPR010409 -
Pumo6g01383 280 SMART GAGA_bind_2 1 280 IPR010409 -
Pumo6g01383 280 MobiDBLite consensus disorder prediction 86 111 - -
Pumo6g01383 280 Pfam GAGA binding protein-like family 1 280 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01383 Pumo-Chr6 18641751 18643701 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01383 1 280 BBR or BPC Transcription factor family AT2G01930 57.718 1.33e-107 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Pumo6g01383 GAGA_bind 1e-104 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01383 6 18641751 18643701 Pumo6g01383 6 18641751 18643701 ECH