Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01293 ATGGACAATGGTTGCTTCTCTTCTCCACGCCACGATGCTTTTCCAGCTGGTCTGCGAGTTCTTGTTGTTGATGATGATCCAACATGGCTGAGGATCCTTGAAAAGATGCTCAAGAAGTGCTTGTATGAAGTGACAACATGTTGTTTAGCAACAGAGGCTCTGAAAAAACTTCGTGAAAGGAAAGATGCATATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGCTTCAAACTTCTCGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATCATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAGGGTGTCCAACATGGAGCATGTGATTATCTCCTCAAGCCTATTAGGATGAAAGAACTGCGAAACATATGGCAACACGTCTTTAGAAAAAGGATGCACGAGGCAAGAGATTTTGAAAGTCTTGAGGGTTTTGAGGGCATTCACTTAATGAGAAATGGATCAGATCACTCTGATGATGGTAACCTGTTTGCTGTAGAAGAAATTACCTCAATGAAGAAAAGAAAAGATGCAGATAACAAACATGATGATAAAGAATTTGGAGATCATTCTCCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTCAAAGCAGTGAATCAAATTGGATTTGATAAAGTTGGGCCCAAGAAAATTCTAGATTTGATGAATGTTCCATGGTTGTCTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAGAATGATCAGAAATCTTCCTCAAGTGGAATAAAGCATTCGGATTCACCTTCAAAAGATCCAGGAAGTTTTAGTATTCTAAACACTTCAAACAAGCAACAAAATGATATTGCCATTGACAGCTTCAGTTATTCAGATGGAACTCTACTACTTCAGATGGATGCTACAAGTCATGAAGGTGATCTCAAGGGAATTGTGTCAGAGCCTGCAACCGAAAAAAGGAGAGCTTCCACCAGTGACATTCCTGACCCAAAGATACAAAAAAGTTCACAGATGGGCCTTAATCAACCTTTTGCATCTGTAGAGTCATCAGAAGCAAACCATGCAGTTTTTGATTGCACCATACCAACACAGTACTCTTGGAGTGAGTTTCCAAAAGGGCCACTCAAAGAAGAACAGAAGACACTTGTTCAATTAGAGGATAGCTTCAGCCAGTTGCCATTACATGGTACACATACACAGCATCACATTCAGGTCGATCAATCACAATCAATTGCCTCAATTAATTCCAATCCCTCTATAACAAAAGAAGAGGTTGCTGCCAGCTTAGAGACCAAACCTTTGTATGCTGGTTACAAGAGTGACTATGTCAGTCCTGTGAGTTCAATAGGATCTGCAGTTGAAACCTTTCCTAATCAGTCCAAAAGCATTATGGTGAATGATCAATCTTCAGAGCCCACTTTCACCTCAAATTTGAGCTTGAAGACTCAGGGATTTAATCTAGATTGCATTTCTGATCTGGATTTTTACCACAGAAACCTATTATTGGGTGGTGAGGCTGCTTCTGCACCTTTGGAGGAGGACCTGAATTTCTTTTTGCTACAAAGTGAATGCTACAACATGAATTTTGGCCTGCAGAATATAGATATGTCAGAGTATTATGATCCAAGGCTTATTGCTGAAGGCCCTAGCCACTTTTATGATTCAGCAGATTATTCATCGGTAGATCAAAGTCTATTCATAGCATGA 1749 0.4042 MDNGCFSSPRHDAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESLEGFEGIHLMRNGSDHSDDGNLFAVEEITSMKKRKDADNKHDDKEFGDHSPTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKENDQKSSSSGIKHSDSPSKDPGSFSILNTSNKQQNDIAIDSFSYSDGTLLLQMDATSHEGDLKGIVSEPATEKRRASTSDIPDPKIQKSSQMGLNQPFASVESSEANHAVFDCTIPTQYSWSEFPKGPLKEEQKTLVQLEDSFSQLPLHGTHTQHHIQVDQSQSIASINSNPSITKEEVAASLETKPLYAGYKSDYVSPVSSIGSAVETFPNQSKSIMVNDQSSEPTFTSNLSLKTQGFNLDCISDLDFYHRNLLLGGEAASAPLEEDLNFFLLQSECYNMNFGLQNIDMSEYYDPRLIAEGPSHFYDSADYSSVDQSLFIA 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01293 582 MobiDBLite consensus disorder prediction 321 351 - -
Pumo6g01293 582 PIRSF RR_ARR_type-B 2 565 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pumo6g01293 582 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Pumo6g01293 582 MobiDBLite consensus disorder prediction 262 288 - -
Pumo6g01293 582 FunFam Two-component response regulator 196 259 - -
Pumo6g01293 582 CDD REC_typeB_ARR-like 20 134 - -
Pumo6g01293 582 SMART REC_2 18 130 IPR001789 GO:0000160
Pumo6g01293 582 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 267 IPR045279 GO:0009736
Pumo6g01293 582 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Pumo6g01293 582 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Pumo6g01293 582 SUPERFAMILY CheY-like 17 143 IPR011006 -
Pumo6g01293 582 MobiDBLite consensus disorder prediction 325 341 - -
Pumo6g01293 582 Gene3D - 197 259 - -
Pumo6g01293 582 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Pumo6g01293 582 Gene3D - 18 184 - -
Pumo6g01293 582 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01293 Pumo-Chr6 17192853 17197745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01293 12 266 Response Regulator Gene Family AT2G25180 54.545 3.04e-82 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo6g01293 Response_reg 2.4e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01293 6 17192853 17197745 Pumo6g01293 6 17192853 17197745 ECH
Pumo1g00416 1 5858980 5863138 Pumo6g01293 6 17192853 17197745 PCT